Kegg Pathway: Caprolactam degradation

J Nanosci Nanotechnol. 2008 May; 8(5): 2347-56
Salvador-Morales C, Basiuk EV, Basiuk VA, Green ML, Sim RB

We report the effect of chemical modification of multi-walled carbon nanotubes (MWNTs) on their activation of the human serum complement system, as well as the adsorption of human plasma proteins on MWNTs. Four different types of chemically-modified MWNTs were tested for complement activation via the classical and alternative pathways using haemolytic assays. Human plasma protein binding was also tested using an affinity chromatography technique based on carbon nanotube-Sepharose matrix. Covalent functionalization of MWNTs greatly altered the level of activation of the complement system via the classical pathway. For example, MWNTs functionalised with epsilon-Caprolactam or L-alanine showed respectively >90% and >75% reduction in classical pathway activation compared with unmodified MWNTs. These results demonstrate for the first time that these types of chemical modification are able to alter considerably the levels of specific complement proteins bound by pristine MWNTs (used as a control experiment). The reduced levels of complement activation via the classical pathway, that are likely to increase biocompatibility, were directly correlated with the amount of C1q protein bound to chemically modified carbon nanotubes. An inverse correlation was also observed between the amount of complement factor H bound to chemically modified MWNTs and the level of complement consumption via the alternative pathway. Binding of human plasma and serum proteins to pristine and modified MWNTs was highly selective. The chemical modifications studied generally increased nanotube dispersibility in aqueous media, but diminished protein adsorption.

Prikl Biokhim Mikrobiol. 2008 Jan-Feb; 44(1): 84-9
Miasoedova NM, Chernykh AM, Psurtseva NV, Belova NV, Golovleva LA

Two promising strains of laccase producers--Lentinus strigosus 1566 and Steccherinum ochraceum 1833--were found by screening of basidiomycetes. The cultivation conditions increasing the enzyme yield were selected. The maximal laccase activity was observed in the case of submerged cultivation of the mycelium immobilized on polycaproamide fibers in rich media in the presence of 2 mM CuSO4 in combination with the optimal inducer, namely, 2,6-dimethylphenol for L. strigosus and 2,4-dimethylphenol for S. ochraceum. Under these conditions, the activity of S. ochraceum laccase amounted to 33.1 U/ml and that of L. strigosus, to 186.5 U/ml. Anthracene was transformed with S. ochraceum laccase, and its oxidation to anthraquinone was demonstrated by mass spectrometry.

J Org Chem. 2008 Jun 6; 73(11): 4317-9
McLaughlin EC, Doyle MP

Dirhodium(II) Caprolactamate (1, Rh 2(cap) 4) with 70% w/w aqueous tert-butyl hydroperoxide (T-HYDRO ) is a highly effective catalytic oxidation protocol for the selective C-H oxidation of alkynes to propargylic ketones. The oxidation occurs readily in aqueous solvent under mild conditions with an inexpensive and easily handled oxidant. Alpha,beta-acetylenic carbonyl compounds are formed in up to 80% isolated yield.

J Org Chem. 2008 Apr 18; 73(8): 3212-7
Janey JM, Orella CJ, Njolito E, Baxter JM, Rosen JD, Palucki M, Sidler RR, Li W, Kowal JJ, Davies IW

An expedient, five step synthesis of Caprolactam 1 is reported starting from natural L-homoserine. The key step is a chemoselective reductive cyclization of alpha,beta-unsaturated nitrile 10 mediated by Raney-Co type metals. This hydrogenation is extensively investigated in order to account for the observed product distribution and yields.

Anal Bioanal Chem. 2008 Jun; 391(3): 847-57
Félix JS, Monteiro M, Manzoli JE, Padula M, Pezo D, Romero J, Nerín C

The aim of this work was to identify the degradation compounds produced during irradiation of multilayer polyamide 6 (PA-6) films and to study their migration into water and 95% ethanol food simulant. After irradiation of multilayer PA-6 films at 3, 7 and 12 kGy, degradation compounds were extracted using solid-phase microextraction, for which the time and temperature of extraction and stirring were optimized, and identified by gas chromatography-mass spectrometry. Caprolactam, 2-cyclopentylcyclopentanone and aldehydes, among other compounds, were identified in the headspace of the films. Polydimethylsiloxane was considered the best fiber for extraction. The optimum conditions of time, temperature and stirring to extract the compounds were 20 min, 80 degrees C and 225 rpm. For validation purposes, the compounds were quantified in water and 95% ethanol and the results showed high sensitivity, good precision and accuracy. Migration of compounds from irradiated and non-irradiated multilayer PA-6 films into water and 95% ethanol food simulants was carried out at 40 degrees C for 10 days. The method was efficient for the quantification of decaldehyde, 2-cyclopentylcyclopentanone and Caprolactam that migrated from multilayer PA-6 films into food simulants.

Org Lett. 2007 Dec 20; 9(26): 5349-52
Choi H, Doyle MP

Dirhodium Caprolactamate is the most efficient catalyst for the oxidation of Delta5-steroids to 7-keto-Delta5-steroids by 70% tert-butyl hydroperoxide in water (T-HYDRO). Isolated product yields range from 38 to 87%.

Appl Microbiol Biotechnol. 2008 Jan; 77(5): 985-93
Zheng YG, Chen J, Liu ZQ, Wu MH, Xing LY, Shen YC

Strain ZJB-063, a versatile nitrile-amide-degrading strain, was newly isolated from soil in this study. Based on morphology, physiological tests, Biolog and the 16S rDNA sequence, strain ZJB-063 was identified as Bacillus subtilis. ZJB-063 exhibited nitrilase activity without addition of inducers, indicating that the nitrilase in B. subtilis ZJB-063 is constitutive. Interestingly, the strain exhibited nitrile hydratase and amidase activity with the addition of epsilon-Caprolactam. Moreover, the substrate spectrum altered with the alteration of enzyme systems due to the addition of epsilon-Caprolactam. The constitutive nitrilase was highly specific for arylacetonitriles, while the nitrile hydratase/amidase in B. subtilis ZJB-063 could not only hydrolyze arylacetonitriles but also other nitriles including some aliphatic nitriles and heterocyclic nitriles. Despite comparatively low activity, the amidase of hydratase/amidase system was effective in converting amides to acids. The versatility of this strain in the hydrolysis of various nitriles and amides makes it a potential biocatalyst in organic synthesis.

Biotechnol Appl Biochem. 2008 Jul; 50(Pt 3): 147-53
Chen J, Zheng YG, Shen YC

Resting cells of Bacillus subtilis ZJB-063 were used for the direct transformation of MOPAN (p-methoxyphenylacetonitrile) to MOPAA (p-methoxyphenylacetic acid), which is an important pharmaceutical intermediate. The B. subtilis ZJB-063 culture conditions for the production of nitrilase and the reaction conditions for this nitrilase-mediated conversion were optimized. The maximum production of nitrilase was achieved when glucose and a combination of ammonium sulfate and yeast powder were added as carbon and nitrogen sources respectively. Previously reported inducers were found to be unnecessary for the production of nitrilase from B. subtilis ZJB-063, which indicated that this nitrilase appeared to be constitutive. However, when epsilon-Caprolactam (6-hexanolactam) was added as the inducer, B. subtilis ZJB-063 exhibited nitrile hydratase and amidase activity. The maximum conversion of MOPAN into MOPAA (specific activity 17.03 units.g(-1)(DCW); DCW is dry cell weight) was observed in a solution containing 50 mM phosphate buffer (pH 7.0), 10 mM MOPAN, 2.7 mg DCW.ml(-1) wet resting cells and 5% (v/v) DMSO for 4 h at 32 degrees C. MOPAN (10 mM) was completely converted into MOPAA (9.65 mM) in 5 h in shake flasks without the formation of p-methoxyphenylacetamide. The small deviation of MOPAA (9.65 mM) from the theoretical amount (10 mM) may be due to partial consumption of the products by B. subtilis ZJB-063. Both MOPAN and MOPAA inhibited the hydrolysis at concentrations above 15 mM. Scale up of the reaction to 200 ml in a bubble bioreactor shortened the reaction time compared with the reactions performed in shake flasks.

J Mater Sci Mater Med. 2008 Jan; 19(1): 257-67
Hemmrich K, Salber J, Meersch M, Wiesemann U, Gries T, Pallua N, Klee D

Biodegradable polyesters are established biomaterials in medicine due to their chemical characteristics and options for material processing. A main problem, however, is the release of acid degradation products during biodegradation with severe local pH-drops and inflammatory reactions. Polyesteramides, in contrast, show a less prominent pH-drop during degradation. In this study, we developed a simple, reproducible synthesis of the poly(ester amide) (PEA) type C starting from epsilon-Caprolactame, 1,4-butanediol, and adipic acid in a one-batch two-step reaction and conducted the manufacturing of PEA-derived 3D textile scaffolds applicable for tissue engineering purposes. The thermal and mechanical properties of PEA-type C were analysed and the structural conformity of different batches was confirmed by NMR spectroscopy and size exclusion chromatography. The polymer was formed into nonwovens by textile manufacturing. Cytotoxicity tests and X-ray photoelectron spectroscopy (XPS) were used to analyze the effect of scaffold extraction before cell seeding. The manufactured carriers were seeded with human preadipocytes and examined for cellular proliferation and differentiation. The production of PEA type C successfully occurred via simultaneous ring-opening polymerization of epsilon-Caprolactame and polycondensation with 1,4-butanediol and adipic acid at 250 degrees C under high-vacuum. Soxhlet extraction allowed optimal cleaning of nonwoven scaffolds. Extracted PEA-derived matrices were capable of allowing good adherence, proliferation, and differentiation of preadipocytes. These results are encouraging and guidance towards an optimally prepared nonwoven carrier applicable for clinical use.

Appl Environ Microbiol. 2007 Aug; 73(16): 5370-3
Yamaguchi S, Komeda H, Asano Y

D- and L-amino acids were produced from L- and D-amino acid amides by D-aminopeptidase from Ochrobactrum anthropi C1-38 and L-amino acid amidase from Pseudomonas azotoformans IAM 1603, respectively, in the presence of alpha-amino-epsilon-Caprolactam racemase from Achromobacter obae as the catalyst by dynamic kinetic resolution of amino acid amides.

Bioresour Technol. 2008 May; 99(7): 2566-70
Pahujani S, Kanwar SS, Chauhan G, Gupta R

An extracellular alkaline lipase of a thermo tolerant Bacillus coagulans BTS-3 was immobilized onto glutaraldehyde activated Nylon-6 by covalent binding. Under optimum conditions, the immobilization yielded a protein loading of 228 microg/g of Nylon-6. Immobilized enzyme showed maximum activity at a temperature of 55 degrees C and pH 7.5. The enzyme was stable between pH 7.5-9.5. It retained 88% of its original activity at 55 degrees C for 2h and also retained 85% of its original activity after eight cycles of hydrolysis of p-NPP. Kinetic parameters Km and Vmax were found to be 4mM and 10 micromol/min/ml, respectively. The influence of organic solvents on the catalytic activity of immobilized enzyme was also evaluated. The bound lipase showed enhanced activity when exposed to n-heptane. The substrate specificity of immobilized enzyme revealed more efficient hydrolysis of higher carbon length (C-16) ester than other ones.

ACS Chem Biol. 2007 Jun 15; 2(6): 408-18
Fuwa H, Takahashi Y, Konno Y, Watanabe N, Miyashita H, Sasaki M, Natsugari H, Kan T, Fukuyama T, Tomita T, Iwatsubo T

Divergent synthesis of multifunctional molecular probes based on Caprolactam-derived dipeptidic gamma-secretase inhibitors (GSIs), Compound E (CE) and LY411575 analogue (DBZ), was efficiently accomplished by means of Cu(I)-catalyzed azide/alkyne fusion reaction. Photoaffinity labeling experiments using these derivatives coupled to photoactivatable and biotin moieties provided direct evidence that the molecular targets of CE and DBZ are the N-terminal fragment of presenilin 1 within the gamma-secretase complex. Moreover, these photoprobes directly targeted signal peptide peptidase. These data suggest that the divergent synthesis of molecular probes has been successfully applied to characterize the interaction of GSIs with their molecular targets and define the structural requirements for inhibitor binding to intramembrane-cleaving proteases.

Chem Commun (Camb). 2007 Feb 21; 745-7
Choi H, Doyle MP

The dirhodium Caprolactamate [Rh(2)(cap)(4)] catalyzed oxidation of secondary amines to imines by tert-butyl hydroperoxide (TBHP) occurs with high chemo- and regioselectivity.

J Am Chem Soc. 2007 Mar 28; 129(12): 3504-5
Nichols JM, Wolf J, Zavalij P, Varughese B, Doyle MP

J Biotechnol. 2007 Mar 10; 128(4): 849-57
Araújo R, Silva C, O'Neill A, Micaelo N, Guebitz G, Soares CM, Casal M, Cavaco-Paulo A

Cutinase from Fusarium solani pisi was genetically modified near the active site, by site-directed mutagenesis, to enhance its activity towards polyethylene terephthalate (PET) and polyamide 6,6 (PA 6,6) fibers. The mutations L81A, N84A, L182A, V184A and L189A were done to enlarge the active site in order to better fit a larger polymer chain. Modeling studies have shown enhanced free energy stabilization of model substrate tetrahedral intermediate (TI) bound at the enzyme active site for all mutants, for both model polymers. L81A and L182A showed an activity increase of four- and five-fold, respectively, when compared with the wild type, for PET fibers. L182A showed the one- and two-fold higher ability to biodegrade aliphatic polyamide substrates. Further studies in aliphatic polyesters seem to indicate that cutinase has higher ability to recognize aliphatic substrates.

Chemosphere. 2007 May; 67(10): 2089-95
Friedrich J, Zalar P, Mohorcic M, Klun U, Krzan A

Fifty-eight fungi have been tested for their ability to degrade a recalcitrant synthetic polymer polyamide-6, generally known as nylon-6. Most of them were isolated from a factory producing nylon-6. After preliminary screening, 12 strains were selected for submerged culture in a medium with nylon fibres as the only N-source. No degradation was observed with the isolates from the factory. Wood degrading fungi from a culture collection, however, degraded nylon after incubation for several weeks. Bjerkandera adusta disintegrated the fibres most efficiently, starting with the small transverse grooves, which deepened into cracks. The superficial layers crumbled to leave a thin inner core of the fibre, which finally broke down into fragments. The remaining insoluble part of the nylon showed a decrease in number average molecular mass from 16900 to 5600 during a 60-day incubation. Its thermal properties, such as shifts in melting points and broadening of the melting endotherms, were altered. The reduction of the amount of nylon and the composition of the liquid phase indicated that part of the polymer was degraded into soluble products. After 50 days, the total nitrogen content of the soluble fraction was 10-fold higher than in the control sample. Manganese peroxidase, presumably responsible for the degradation, was detected in the liquid phase. The study shows that only white rot fungi are able to break down nylon-6. For the first time this polymer was shown to be disrupted by B. adusta. The extent of the biodegradation indicates its potential for application in nylon waste reduction.

Folia Microbiol (Praha). 2006; 51(5): 425-30
Sasek V, Vitásek J, Chromcová D, Prokopová I, Brozek J, Náhlík J

Two types of copolymers--poly(ester-amide)s--by the anionic copolymerization of epsilon-Caprolactam and epsilon-caprolactone, and aromatic-aliphatic copolyesters based on glycolyzed polyethylene terephthalate from used beverage bottles and epsilon-caprolactone were prepared. Biodegradation tests of these copolymers were performed by two methods, viz. composting under controlled conditions and treatment with ligninolytic fungi. Both methods resulted in degradation of the copolymers, composting being more robust. Out of fungal strains tested Inonotus hispidus degraded aromatic-aliphatic copolyesters most intensively.

Bioorg Med Chem. 2007 Feb 1; 15(3): 1311-22
Wang Y, O'Neil SV, Wos JA, Oppong KA, Laufersweiler MC, Soper DL, Ellis CD, Baize MW, Fancher AN, Lu W, Suchanek MK, Wang RL, Schwecke WP, Cruze CA, Buchalova M, Belkin M, De B, Demuth TP

Peptidomimetic compounds possessing a Caprolactam ring constraint were prepared and evaluated as interleukin-1beta converting enzyme (ICE) inhibitors. The Caprolactam ring was used to constrain the P3 region of our inhibitors. This strategy proved to be effective for the synthesis of ICE inhibitors, maintaining key hydrogen bond interactions with the enzyme and invoking a preferred conformation for binding. Several compounds exhibited IC(50) values less than 10nM in a caspase-1 enzyme assay and less than 100nM in a THP-1 whole cell assay measuring IL-1beta production. Two compounds, 13c and 13j, were found to have good oral bioavailability (>50%) in rats when administered as prodrugs.

J Chem Ecol. 2006 Apr; 32(4): 845-64
Stewart-Jones A, Poppy GM

Plants release volatile chemicals into their surrounding air space that can affect the physiology of neighboring plants and influence the behavior of insects. In studying these interactions, it is desirable to collect volatiles from plants that have not been excised and are growing under as natural conditions as possible. We compared a vessel of borosilicate glass and Nylon-6 or polyester [poly(ethyleneterephthalate) or PET] cooking bags for enclosing plants during collection of volatiles. A push-pull airflow system was used, and volatiles were trapped on Tenax TA and analyzed by gas chromatography after thermal desorption. Low levels of impurities were found for the glass vessel and polyester bags. Nylon bags contained higher levels and more impurities. Recoveries of standards of 10 plant volatiles were measured in static and dynamic systems. In a static air system, there was good recovery only from the glass vessel. In a dynamic system, there was generally good recovery from both the glass vessel and polyester bags. Recoveries of alpha-pinene and (Z)-jasmone were poor throughout. The former was shown to have a very low breakthrough volume on the Tenax TA adsorbent, and the latter may be strongly adsorbed on glass. All three materials were essentially transparent in the IR and visible (photosynthetic) range but with significantly different absorptions in the UV range. In a simulated dynamic entrainment in full sunlight, internal vessel temperatures were higher than ambient by up to 9.5 degrees C in the glass vessel and 7.5 degrees C in the polyester bag. Lower increases in temperature relative to ambient (<1 degrees C) were recorded when entrainments were conducted in the shade. In a field trial, the profiles of volatiles collected from an apple tree infested with rosy apple aphid using a glass vessel and a polyester bag were similar. Polyester bags are recommended as more convenient than glass vessels for the enclosure of plants during the collection of volatiles.

Bioorg Med Chem Lett. 2006 May 1; 16(9): 2357-63
Thompson LA, Liauw AY, Ramanjulu MM, Kasireddy-Polam P, Mercer SE, Maduskuie TP, Glicksman M, Roach AH, Meredith JE, Liu RQ, Combs AP, Higaki JN, Cordell B, Seiffert D, Zaczek RC, Robertson DW, Olson RE

The synthesis, evaluation, and structure-activity relationships of a series of succinoyl lactam inhibitors of the Alzheimer's disease gamma-secretase are described. Beginning with a screening hit with broad proteinase activity, optimization provided compounds with both high selectivity for inhibition of gamma-secretase and high potency in cellular assays of A beta reduction. The SAR and early in vivo properties of this series of inhibitors will be presented.