Kegg Pathway: Regulation of actin cytoskeleton

KEGG ID: 04810

Reference Diagram

KEGG Diagram for Regulation of actin cytoskeleton

Rat

There are 191 IPI Records from this pathway found in Rattus norvegicus.

Location of Regulation of actin cytoskeleton proteins on Rat Genome

IPI Record Position
1: Abi2 :-
2: Actb 12:12047070-12050051
3: Actg1 10:109773489-109777655
4: Actn1 6:103110009-103282917
5: Actn2_predicted 17:68670924-68773261
6: Actn3 1:207475569-207492267
7: Actn4 1:84000723-84073767
8: Apc 18:26732147-26790383
9: Apc2_predicted 7:10906423-10920010
10: Arhgef1 1:80209480-80226243
11: Arhgef12 8:45832789-46106412
12: arhgef6 X:141946362-142068557
13: Arhgef7 16:82523280-82635476
14: Arpc1a 12:9828469-9833876
15: Arpc1b 12:9796269-9803645
16: Arpc2_predicted 9:73563489-73599262
17: Arpc3_predicted 12:35366969-35377275
18: Arpc4_predicted 4:149262401-149267321
19: Arpc5 13:67755414-67764256
20: Arpc5l 3:18798930-18801987
21: Baiap2 10:109351262-109418859
22: Bcar1 19:41646190-41669265
23: Bdkrb1 6:129760129-129762545
24: Bdkrb2 :-
25: Braf 4:67121585-67243058
26: Cd14 18:29374597-29376328
27: Cdc42 5:156106131-156143040
28: Cfl1 1:208135825-208137410
29: Cfl2_predicted 6:75205669-75206366
30: Chrm1 1:211351738-211353120
31: Chrm2 4:63911336-63912736
32: Chrm3 17:71214893-71218463
33: Chrm4 3:76306953-76309729
34: Chrm5 3:98326973-98328568
35: Coro1c_predicted 12:43647356-43712044
36: Crk 10:63017662-63040420
37: Crkl 11:85520244-85554667
38: Csk 8:61381337-61399140
39: Cyfip1_predicted 1:107245982-107334336
40: Cyfip2_predicted 10:31323262-31443532
41: Diap1_predicted 18:30757721-30855455
42: Egf 2:227107576-227194674
43: Egfr 14:97617358-97788213
44: F2 3:76005323-76018612
45: F2r 2:25987859-25989070
46: Fgd3_predicted 17:21306220-21342775
47: Fgf1 18:31785480-31806452
48: Fgf10 2:50866799-50940319
49: Fgf11 10:56619650-56622972
50: Fgf12 11:74208696-74481037
51: Fgf13 X:144200839-144499731
52: Fgf14 15:109054330-109714364
53: Fgf15 1:205324890-205328178
54: Fgf16 X:93870222-93880825
55: Fgf17 15:51038529-51044118
56: Fgf18 :-
57: Fgf2 2:123893314-123947684
58: Fgf20 16:55386987-55393744
59: Fgf21 1:96082475-96083718
60: Fgf22 7:11463299-11465189
61: Fgf23 4:163468604-163476325
62: Fgf3 1:205269393-205273404
63: Fgf4 1:205292272-205293705
64: Fgf5 14:12713971-12734634
65: Fgf6 4:163403896-163412431
66: Fgf7 3:113468427-113517538
67: Fgf8 1:250951023-250956730
68: Fgf9 15:37114459-37155913
69: Fgfr1 16:70869944-70924029
70: Fgfr2 1:189484251-189589294
71: Fgfr3 14:82683191-82697229
72: Fgfr4 17:15512144-15527328
73: Fn1 9:70702181-70771155
74: Git1 10:66611153-66618922
75: Gna12 12:14275676-14354843
76: Gna13 10:98933230-98965795
77: Gng12 4:96622363-96624127
78: Gsn 3:14360255-14386084
79: Hras 1:201385708-201388983
80: Ins1 1:258001134-258001688
81: Ins2 1:202935548-202936379
82: IPI00204540 17:15261698-15262111
83: IPI00362670 9:63798695-63865608
84: IPI00362823 3:61919851-62097221
85: IPI00367137 X:83168263-83168670
86: IPI00371093 10:91557256-91574194
87: IPI00763463 :-
88: IPI00765011 :-
89: Iqgap1_predicted 1:136553443-136644285
90: Iqgap3_predicted 2:180156261-180198814
91: Itga1 2:47107864-47206261
92: Itga10_predicted 2:191448640-191466650
93: Itga11_predicted 8:66827530-66937187
94: Itga2 2:46967695-47040057
95: Itga3_predicted 10:83729230-83760455
96: Itga5 7:142254253-142277433
97: Itga6 3:54203293-54272888
98: Itga7 7:2230747-2269406
99: Itgad 1:187436276-187464212
100: Itgae :-
101: Itgal 1:186561872-186598114
102: Itgam 1:187334413-187385583
103: Itgav_predicted 3:66952418-67029317
104: Itgb1 19:58601188-58628500
105: Itgb2 20:11446531-11485009
106: Itgb3 :-
107: Itgb4 10:106080448-106116634
108: Itgb6 3:42286140-42360793
109: Itgb7 7:140971311-140984091
110: Kras 4:182869242-182895106
111: Limk1 12:23091784-23125718
112: Limk2 14:83969282-84037218
113: Map2k1 8:68379077-68451583
114: Map2k2 7:10074654-10094005
115: Mapk1 11:85968732-86030389
116: Mapk3 1:185935044-185941249
117: Mk1 16:19286470-19286847
118: Mos 5:17159015-17160181
119: Mras 8:104244660-104300504
120: Msn X:83760407-83784214
121: Myh10 10:55445288-55576098
122: Myh14 1:95081948-95146455
123: Myh9 7:115681444-115732774
124: Myl2 12:35653817-35663865
125: Myl7_predicted 14:86568143-86570932
126: Myl9_predicted 3:147177777-147193863
127: Mylk2 3:143252234-143262989
128: Mylk_predicted 11:67604357-67782117
129: Mylpf 1:186472955-186474466
130: Nckap1l_predicted 7:142351992-142395781
131: Nras 2:198292616-198302308
132: Pak1 1:155057622-155174714
133: Pak2 11:70529961-70588515
134: Pak3 X:34734814-34842093
135: Pak4_predicted 1:83671618-83718945
136: Pak6_predicted 3:105184040-105192149
137: Pak7_predicted 3:124152031-124457583
138: Pdgfa 12:16155455-16172304
139: Pdgfb 7:118245297-118261626
140: Pdgfra 14:35369673-35418129
141: Pdgfrb 18:57014475-57053583
142: Pfn1 10:57531658-57534366
143: Pfn2 2:147066813-147072519
144: Pik3ca 2:118640277-118670170
145: Pik3cb 8:103886682-103957112
146: Pik3cd_predicted 5:166735338-166750186
147: Pik3cg_predicted 6:50444793-50477111
148: Pik3r1 2:32602673-32675350
149: Pik3r2 16:19171101-19179650
150: Pik3r3 5:136497494-136566473
151: Pip5k1b 1:227699696-227846963
152: Pip5k1c 7:9884377-9909623
153: Pip5k2a 17:92952704-92961338
154: Pip5k2b 10:86464211-86490407
155: Pip5k2c 7:67152061-67166564
156: Ppp1ca 1:206774701-206778330
157: Ppp1cb 6:24067538-24099280
158: Ppp1cc 12:35580169-35598339
159: Ppp1r12a 7:46876642-46985742
160: Ppp1r12b_predicted 13:47710655-47917510
161: Ptk2 7:110933285-111084554
162: Pxn 12:42323997-42333765
163: Rac1 12:11380314-11400531
164: Rac2 7:116520066-116532482
165: Raf1 4:151752583-151775613
166: RGD1561123_predicted 1:187396184-187416273
167: RGD1563261_predicted 10:55182226-55247889
168: RGD1563276_predicted 11:68642354-68758943
169: RGD1564327_predicted 17:86429719-86673201
170: RGD1565941_predicted 2:204981254-205324562
171: RGD1565978_predicted 9:110171418-110186247
172: Rhoa :-
173: Rock1 18:1366989-1511865
174: Rock2 6:40581295-40667231
175: Rras2 1:172026260-172097710
176: Rras_predicted 1:95490697-95495452
177: Scin 6:59237930-59357001
178: Slc9a1 5:151680694-151748460
179: Sos1 6:3310823-3394313
180: Sos2 6:91610826-91722481
181: Ssh2_predicted 10:66661309-66725513
182: Ssh3 1:206848015-206856178
183: Tiam1 11:30128733-30252936
184: Tmsb4x :-
185: Vav1 :-
186: Vav2_predicted 3:6155687-6347206
187: Vcl_predicted 15:3480195-3654131
188: Vil2 1:41178192-41221334
189: Wasf1 :-
190: Wasf2 5:151930684-151948306
191: Was_predicted X:26434165-26444819

Mouse

There are 191 IPI Records from this pathway found in Mus musculus.

Location of Regulation of actin cytoskeleton proteins on Mouse Genome

IPI Record Position
1: 6720456B07Rik 6:113570535-113582725
2: Abi2 1:60354280-60425704
3: Actb 5:143168256-143171864
4: Actg1 11:120161781-120164582
5: Actn1 12:81086385-81179156
6: Actn2 13:12323759-12395065
7: Actn3 19:4861223-4877884
8: Actn4 7:28602011-28671040
9: Apc 18:34345794-34443382
10: Apc2 10:79704967-79719154
11: Araf X:20005537-20017478
12: Arhgef1 7:24611809-24612156
13: Arhgef12 9:42714838-42856481
14: Arhgef6 X:53578271-53685513
15: Arhgef7 8:11728141-11835191
16: Arpc1a 5:145337396-145362288
17: Arpc1b 5:145367783-145381585
18: Arpc2 1:74169784-74197664
19: Arpc3 5:122652495-122666796
20: Arpc5 1:154528943-154537796
21: Arpc5l 2:38830205-38837885
22: Baiap2 11:119758853-119822869
23: Bcar1 8:114597147-114608054
24: Bdkrb1 12:106005141-106006478
25: Bdkrb2 12:105964222-105994121
26: Braf 6:39543731-39654902
27: Cd14 18:36851038-36852628
28: Cdc42 4:136591778-136629755
29: Cfl1 19:5492497-5495201
30: Cfl2 12:55779260-55779968
31: Chrm1 19:8731396-8748612
32: Chrm2 6:36453362-36454762
33: Chrm3 13:9876475-9878244
34: Chrm4 2:91728088-91729527
35: Chrm5 2:112280010-112281608
36: Crk 11:75495505-75522289
37: Crkl 16:17365550-17399818
38: Csk 9:57424784-57443375
39: Cyfip1 7:55710046-55798717
40: Cyfip2 11:46037278-46155773
41: D830007F02Rik 8:88214406-88255279
42: Diap1 18:37969583-38061292
43: Diap2 X:125096143-125807462
44: Diap3 14:85381007-85972925
45: Dock1 7:134562672-135011989
46: Egf 3:129669600-129747338
47: Egfr 11:16652206-16813912
48: F2 2:91426157-91437253
49: F2r 13:96702488-96719173
50: Fgd1 X:146387949-146429815
51: Fgd3 13:49275047-49321145
52: Fgf1 18:38965154-39044673
53: Fgf10 13:119833907-119910993
54: Fgf11 11:69612264-69618052
55: Fgf12 16:28075353-28480163
56: Fgf13 X:55408923-55597751
57: Fgf14 14:123115526-123859945
58: Fgf15 7:144705922-144710343
59: Fgf16 X:101967260-101976899
60: Fgf17 14:69371285-69377348
61: Fgf18 11:33017430-33047400
62: Fgf2 3:37540399-37596346
63: Fgf20 8:41777983-41785770
64: Fgf21 7:45481928-45483532
65: Fgf22 10:79158243-79161725
66: Fgf3 7:144648098-144652734
67: Fgf4 7:144670776-144674633
68: Fgf5 5:98494486-98517332
69: Fgf6 6:126981205-126990337
70: Fgf7 2:125726225-125781969
71: Fgf8 19:45790110-45796185
72: Fgf9 14:57027028-57066447
73: Fgfr1 8:26997826-27039466
74: Fgfr2 7:129953601-130057386
75: Fgfr3 5:34038581-34053924
76: Fgfr4 13:55162262-55178355
77: Fn1 1:71518731-71586380
78: Git1 11:77309607-77323969
79: Gna12 5:141012418-141082905
80: Gna13 11:109178921-109212576
81: Gng12 6:66945329-66950872
82: Gsn 2:35104449-35129901
83: Hras1 7:141040427-141045314
84: Ins1 19:52317765-52318343
85: Ins2 7:142488051-142489098
86: IPI00409405 8:43745728-43746228
87: IPI00462975 X:56391895-56393013
88: IPI00762073 X:91761065-91761469
89: Iqgap1 7:80586294-80676807
90: Itga1 13:116080957-116222842
91: Itga10 3:96741908-96749918
92: Itga11 9:62475867-62581975
93: Itga2 13:115956703-116052930
94: Itga2b 11:102269387-102285973
95: Itga3 11:94860566-94892891
96: Itga4 2:79056339-79133962
97: Itga5 15:103172320-103194797
98: Itga6 2:71587779-71657597
99: Itga7 10:128336767-128361229
100: Itga8 2:12024513-12219773
101: Itga9 9:118455407-118747637
102: Itgae 11:72906778-72963636
103: Itgal 7:127087558-127124876
104: Itgam 7:127853827-127918264
105: Itgav 2:83525354-83604646
106: Itgax 7:127920710-127941804
107: Itgb1 8:131591503-131618179
108: Itgb2 10:76985685-77009099
109: Itgb2l 16:96527198-96548509
110: Itgb3 11:104424146-104483465
111: Itgb4 11:115791069-115824502
112: Itgb5 16:33749412-33868892
113: Itgb6 2:60399131-60523442
114: Itgb7 15:102044030-102059969
115: Itgb8 12:119612103-119652710
116: Kras 6:145173866-145207390
117: Limk1 5:134940679-134973184
118: Limk2 11:3243300-3309238
119: Map2k1 9:63983787-64051430
120: Map2k2 10:80509092-80527465
121: Mapk1 16:16896945-16961016
122: Mapk3 7:126550780-126556964
123: Mos :-
124: Mras 9:99197332-99235248
125: Msn X:92344584-92369353
126: Myh10 11:68508129-68632825
127: Myh14 7:44473872-44538885
128: Myh9 15:77587843-77669360
129: Myl2 5:122362366-122367386
130: Myl7 11:5796639-5798785
131: Mylc2b 17:70878820-70895373
132: Mylc2pl 5:136978805-136985721
133: Mylk 16:34735182-34920279
134: Mylk2 2:152608869-152614502
135: Mylpf 7:127004009-127005343
136: Nckap1 2:80301361-80382000
137: Nckap1l 15:103281828-103326835
138: Nras 3:103187290-103196967
139: Pak1 7:97718145-97787562
140: Pak2 16:31937610-31999020
141: Pak3 X:138765079-139038221
142: Pak4 7:28267579-28277068
143: Pak6 2:118355211-118389459
144: Pak7 2:135773338-136079379
145: Pdgfa 5:139229656-139248584
146: Pdgfb 15:79823129-79842063
147: Pdgfra 5:75434033-75479895
148: Pdgfrb 18:61170519-61210428
149: Pfn1 11:70468044-70470830
150: Pfn2 3:57929825-57935466
151: Pfn3 13:55424375-55424788
152: Pfn4 12:4786043-4795752
153: Pik3ca 3:32627755-32654380
154: Pik3cb 9:98847754-98949439
155: Pik3cd 4:148492970-148542498
156: Pik3cg 12:32758720-32793858
157: Pik3r1 13:102781018-102868441
158: Pik3r2 8:73697168-73705691
159: Pik3r3 4:115719846-115800988
160: Pik3r5 11:68248320-68314041
161: Pip4k2a 2:18760014-18915866
162: Pip4k2b 11:97531247-97560794
163: Pip4k2c 10:126600007-126614504
164: Pip5k1a 3:95145888-95191855
165: Pip5k1b 19:24371129-24506218
166: Pip5k1c 10:80696188-80720532
167: Pip5k3 1:65120978-65208288
168: Ppp1ca 19:4192157-4195419
169: Ppp1cb 5:32735733-32794014
170: Ppp1cc 7:119531075-119533375
171: Ppp1r12a 10:107566510-107681685
172: Ppp1r12b 1:136692379-136772339
173: Ptk2 15:73032589-73250447
174: Pxn 5:115767727-115816985
175: Rac1 5:143761100-143783654
176: Rac2 15:78386424-78400038
177: Rac3 11:120537558-120540059
178: Raf1 6:115584217-115642173
179: Rdx 9:51799393-51841094
180: Rhoa 9:108164298-108196026
181: Rock1 18:10067465-10181315
182: Rock2 12:16920670-17003586
183: Rras 7:44886032-44889683
184: Rras2 7:113837969-113908962
185: Slc9a1 4:132642305-132695773
186: Sos1 17:80306507-80388261
187: Sos2 12:70502371-70576665
188: Ssh1 5:114202650-114254758
189: Ssh2 11:77032620-77271743
190: Ssh3 19:4261668-4269172
191: Tiam1 16:89675970-90032628
192: Tiam2 17:3283055-3475456
193: Tmsb4x X:162551199-162553323
194: Vav1 17:56964450-57013288
195: Vav2 2:27084113-27249042
196: Vav3 3:109468739-109813750
197: Vcl 14:19717950-19822228
198: Vil2 17:6587789-6632412
199: Was X:7238425-7247411
200: Wasf1 10:40571988-40626982
201: Wasf2 4:132402654-132471805
202: Wasl 6:24563813-24614998

Human

There are 191 IPI Records from this pathway found in Homo sapiens.

Location of Regulation of actin cytoskeleton proteins on Human Genome

IPI Record Position
1: ABI2 2:203901401-204000576
2: ACTB 7:5533313-5535814
3: ACTN1 14:68410793-68515747
4: ACTN2 1:234916431-234994554
5: ACTN3 11:66070967-66087373
6: ACTN4 19:43830167-43913010
7: APC 5:112101483-112209834
8: APC2 19:1401148-1424243
9: ARAF X:47305460-47316249
10: ARHGEF1 19:47079090-47103437
11: ARHGEF12 11:119713156-119865855
12: ARHGEF4 2:131390694-131521306
13: ARHGEF6 X:135575372-135691913
14: ARHGEF7 13:110565783-110756081
15: ARPC1A 7:98761446-98801821
16: ARPC1B 7:98705476-98830335
17: ARPC2 2:218790119-218827315
18: ARPC3 12:109357090-109372541
19: ARPC4 :-
20: ARPC5 1:181859024-181871608
21: ARPC5L 9:126664230-126679824
22: BAIAP2 17:76623557-76705827
23: BCAR1 16:73820430-73843004
24: BDKRB1 14:95799760-95800847
25: BDKRB2 14:95740950-95780536
26: BRAF 7:140080754-140271033
27: C3orf10 3:10143338-10143574
28: CD14 5:139991522-139993157
29: CDC42 1:22235157-22292024
30: CFL1 11:65378884-65383462
31: CFL2 14:34249401-34253649
32: CHRM1 11:62432728-62445588
33: CHRM2 7:136203956-136355539
34: CHRM3 1:237859012-238145373
35: CHRM4 :-
36: CHRM5 15:32142129-32144579
37: CRK 17:1270733-1306302
38: CRKL 22:19601722-19638034
39: CSK 15:72861489-72882524
40: CYFIP1 15:20444104-20555043
41: CYFIP2 5:156625669-156755184
42: DIAPH1 5:140875174-140978747
43: DIAPH2 X:95826367-96746652
44: DIAPH3 13:59138719-59635901
45: DOCK1 10:128584013-129140764
46: EGF 4:111053499-111152860
47: EGFR 7:55054219-55242524
48: F2 11:46697331-46717631
49: F2R 5:76047542-76067054
50: FGD1 X:54488612-54539324
51: FGD3 9:94749554-94838339
52: FGF1 5:141951927-142046134
53: FGF10 5:44340854-44424541
54: FGF11 17:7283413-7288980
55: FGF12 3:193342992-193609532
56: FGF13 X:137541401-137894912
57: FGF14 13:101169308-101852156
58: FGF16 X:76596303-76598669
59: FGF17 8:21955883-21962266
60: FGF18 5:170779272-170816767
61: FGF19 11:69222188-69228287
62: FGF2 4:123967313-124038840
63: FGF20 8:16894049-16904061
64: FGF21 19:53950628-53953395
65: FGF22 19:590920-594605
66: FGF23 12:4347654-4359155
67: FGF3 11:69333917-69343129
68: FGF4 11:69296435-69296899
69: FGF5 4:81406766-81431194
70: FGF6 12:4413569-4425041
71: FGF7 15:47502751-47566815
72: FGF8 10:103519877-103525817
73: FGF9 13:21143170-21176637
74: FGFR1 8:38389406-38445296
75: FGFR2 10:122473377-123347962
76: FGFR3 4:1764832-1780396
77: FGFR4 5:176446493-176457726
78: FN1 2:215933409-216009041
79: GIT1 17:24924620-24940735
80: GNA12 7:2734271-2850485
81: GNA13 17:60437296-60483216
82: GNG12 1:67939737-68071738
83: GRLF1 19:52196889-52199655
84: GSN 9:123070228-123134941
85: HRAS 11:522243-525572
86: INS 11:2137585-2139147
87: IQGAP1 15:88732477-88846479
88: IQGAP2 5:75734905-76039711
89: IQGAP3 1:154761821-154809020
90: ITGA1 5:52119531-52285241
91: ITGA10 1:144236248-144255225
92: ITGA11 15:66381469-66511531
93: ITGA2 5:52321014-52423805
94: ITGA2B 17:39805076-39822399
95: ITGA3 17:45488431-45522843
96: ITGA4 2:182029864-182110711
97: ITGA5 12:53075316-53099317
98: ITGA6 2:173000616-173079256
99: ITGA7 12:54364640-54387949
100: ITGA8 10:15595954-15802130
101: ITGA9 3:37468817-37836285
102: ITGAD 16:31312134-31345327
103: ITGAE 17:3564672-3651293
104: ITGAL 16:30391551-30441772
105: ITGAM 16:31180512-31251207
106: ITGAV 2:187163045-187253872
107: ITGAX 16:31274010-31301819
108: ITGB1 10:33229326-33287204
109: ITGB2 21:45130334-45173181
110: ITGB3 17:42686207-42745076
111: ITGB4 17:71229111-71265493
112: ITGB5 3:125964488-126088842
113: ITGB6 2:160664438-160765009
114: ITGB7 12:51871375-51887267
115: ITGB8 7:20337271-20416944
116: KRAS 12:25249449-25295121
117: LIMK1 7:73136092-73174790
118: LIMK2 22:29938250-30006066
119: LOC200025 :-
120: LOC645126 :-
121: LOC653888 :-
122: MAP2K1 15:64466674-64570935
123: MAP2K2 19:4041331-4075126
124: MAPK1 22:20446873-20551730
125: MAPK3 16:30032951-30042116
126: MLCK 16:45298960-45339722
127: MOS 8:57188055-57189095
128: MRAS 3:139549229-139604299
129: MRCL3 18:3237528-3246226
130: MRLC2 18:3252123-3268247
131: MSN X:64804236-64878517
132: MYH10 17:8318248-8474804
133: MYH14 19:55398697-55505610
134: MYH9 22:35007273-35113958
135: MYL2 12:109833009-109842766
136: MYL5 4:657369-665816
137: MYL7 7:44144990-44147441
138: MYL8P :-
139: MYL9 20:34603311-34611640
140: MYLC2PL 7:101043475-101059118
141: MYLK 3:124813835-125085839
142: MYLK2 20:29870822-29886174
143: MYLPF 16:30293622-30296813
144: NCKAP1 2:183497857-183611831
145: NCKAP1L 12:53177796-53223165
146: NRAS 1:115048613-115102147
147: PAK1 11:76710709-76862581
148: PAK2 3:197951312-198043749
149: PAK3 X:110226244-110350815
150: PAK4 19:44308260-44361886
151: PAK6 15:38319361-38356979
152: PAK7 20:9466036-9767689
153: PDGFA 7:504489-525557
154: PDGFB 22:37949310-37971006
155: PDGFRA 4:54790204-54859171
156: PDGFRB 5:149473598-149515615
157: PFN1 17:4789692-4793067
158: PFN2 3:151165384-151171586
159: PFN3 5:176759770-176760183
160: PFN4 2:24191745-24199678
161: PIK3CA 3:180349005-180435189
162: PIK3CB 3:139856921-139960875
163: PIK3CD 1:9634390-9711564
164: PIK3CG 7:106292977-106334801
165: PIK3R1 5:67547360-67633403
166: PIK3R2 19:18125016-18142343
167: PIK3R3 1:46278399-46371054
168: PIK3R5 17:8722953-8756559
169: PIP4K2A 10:22863784-23043490
170: PIP4K2B 17:34177324-34209684
171: PIP4K2C 12:56271253-56283465
172: PIP5K1A 1:149437651-149488636
173: PIP5K1B 9:70510436-70813912
174: PIP5K1C 19:3581182-3651445
175: PIP5K3 2:208839236-208931720
176: PPP1CA 11:66922228-66925978
177: PPP1CB 2:28828118-28926981
178: PPP1CC 12:109642127-109665050
179: PPP1R12A 12:78692317-78853366
180: PPP1R12B 1:200584443-200824320
181: PTK2 8:141737683-142080514
182: PXN 12:119132637-119187904
183: RAC1 7:6380651-6410120
184: RAC2 22:35951238-35970241
185: RAC3 17:77582821-77585366
186: RAF1 3:12600108-12680678
187: RDX 11:109605378-109672647
188: RHOA 3:49371585-49424530
189: ROCK1 18:16787533-16944869
190: ROCK2 2:11239229-11402162
191: RP11-145H9.1 6:2608871-2696153
192: RRAS 19:54830364-54835212
193: RRAS2 11:14256889-14337289
194: SLC9A1 1:27297893-27366059
195: SOS1 2:39066469-39201067
196: SOS2 14:49654812-49767751
197: SSH1 12:107705100-107775480
198: SSH2 17:24977091-25281144
199: SSH3 11:66827527-66836649
200: TIAM1 21:31414352-31853161
201: TIAM2 :-
202: TMSB4X X:12903148-12905267
203: TMSB4Y Y:14324841-14327298
204: TMSL3 4:91979077-91979211
205: TTN 2:179099985-179380394
206: VAV1 19:6723722-6808371
207: VAV2 9:135616837-135847547
208: VAV3 1:107915305-108309108
209: VCL 10:75427878-75549924
210: VIL2 6:159106761-159160432
211: WAS X:48427112-48434762
212: WASF1 6:110528382-110607819
213: WASF2 1:27603317-27689256
214: WASL 7:123109237-123176352

Google Scholar

Recent Literature

Mechanics of the F-actin cytoskeleton.

J Biomech. 2009 Nov 12;
Stricker J, Falzone T, Gardel ML

Dynamic Regulation of the filamentous actin (F-actin) cytoskeleton is critical to numerous physical cellular processes, including cell adhesion, migration and division. Each of these processes require precise Regulation of cell shape and mechanical force generation which, to a large degree, is regulated by the dynamic mechanical behaviors of a diverse assortment of F-actin networks and bundles. In this review, we review the current understanding of the mechanics of F-actin networks and identify areas of further research needed to establish physical models. We first review our understanding of the mechanical behaviors of F-actin networks reconstituted in vitro, with a focus on the nonlinear mechanical response and behavior of "active" F-actin networks. We then explore the types of mechanical response measured of cytoskeletal F-actin networks and bundles formed in living cells and identify how these measurements correspond to those performed on reconstituted F-actin networks formed in vitro. Together, these approaches identify the challenges and opportunities in the study of living cytoskeletal matter.

Tumor-suppression functions of merlin are independent of its role as an organizer of the actin cytoskeleton in Schwann cells.

J Cell Sci. 2009 Nov 15; 122(Pt 22): 4141-9
Lallemand D, Saint-Amaux AL, Giovannini M

Merlin is the product of the Nf2 tumor-suppressor gene, and inactivation of Nf2 leads to the development of neural tumors such as schwannomas and meningiomas in humans and mice. Merlin is a member of the ERM (ezrin, radixin and moesin) family of proteins that function as organizers of the actin cytoskeleton. Merlin structure is thought to be similar to that of the ERM proteins, and is held in a closed clamp conformation via intramolecular interactions of its N-terminal FERM (four-point-one, ERM) domain with an alpha-helical C-terminal domain. Like ERMs, merlin can remodel actin-rich cortical structures, yet merlin uniquely inhibits the proliferation of many different cell types. Here, we report that the F2 subdomain of the FERM domain and a domain close to the C-terminus that is defined by residues 532-579 are essential for merlin-mediated inhibition of primary Schwann cell proliferation. Furthermore, we demonstrate that the F1 subdomain of the merlin FERM domain is required for actin colocalization, proper Regulation of merlin C-terminal phosphorylation and for remodeling the cytoskeleton, yet is not required for the inhibition of Schwann cell proliferation. Thus, tumor suppression by merlin is independent of its role as an organizer of the actin cytoskeleton in Schwann cells.

Spred2 inhibits TGF-beta1-induced urokinase type plasminogen activator expression, cell motility and epithelial mesenchymal transition.

Int J Cancer. 2009 Nov 11;
Villar V, Kocić J, Santibanez JF

TGF-beta1 is a potent inductor of malignance in cancer cells. TGF-beta1 stimulates the expression of extracellular matrix degrading proteases, cell migration and it is also involved in the epithelial-mesenchymal transition (EMT). In the present work, we analyzed the role of Spred2 in the urokinase-type plasminogen activator (uPA) stimulation, EMT and cell migration by TGF-beta1. We found that both the expression of mRNA and the protein level of Spred2 were lower in transformed keratinocytes PDV compared with immortalized keratinocytes MCA-3D. The transient ectopic expression of Spred2 in PDV cells inhibited the TGF-beta1-transactivated SRE-Luc reporter which is related with the ERK1,2 signal. The stable ectopic expression of Spred2 in PDV cells (SP cells) led to the loss of ERK 1,2 activation by TGF-beta1, although Smad2 activation was not affected, and the knockdown of Spred2 enhanced the activation of ERK1,2 signal by TGF-beta1. The increment of uPA expression induced by TGF-beta1 was suppressed in SP cells. In contrast, the stimulus on PAI-1 expression was not affected and comparable to parental PDV cells. SP cells under TGF-beta1 treatment were unable to display the EMT, since the overexpression of Spred2 abolished the TGF-beta1-induced disruption of the E-cadherin cell to cell interactions, reorganization of the actin cytoskeleton and up-Regulation of the mesenchymal marker vimentin. Finally, SP cells could not respond to the TGF-beta1 stimulus on cell migration. Taken together, the data in the present study suggests that Spred2 is a regulator of TGF-beta1-induced malignance in transformed keratinocytes. (c) 2009 UICC.

Cofilin phosphorylation is involved in nitric oxide/cGMP-mediated nociception.

Biochem Biophys Res Commun. 2009 Nov 5;
Zulauf L, Coste O, Marian C, Möser C, Brenneis C, Niederberger E

There is convincing evidence that nitric oxide (NO), cGMP and cGMP-dependent protein kinase I (PKG-I) are involved in the development of hyperalgesia in response to noxious stimuli. However, downstream target proteins contributing to nociception have not been completely identified so far. Several reports indicate a role of the NO/cGMP/PKG cascade in the Regulation of neurite outgrowth which is suggested to be involved in specific mechanisms of nociception. Since neurite outgrowth is strongly dependent on modulation of cytoskeleton proteins we were interested in the impact of PKG-I activation on the actin cytoskeleton and its role in inflammatory hyperalgesia. Therefore we investigated the actin-destabilising protein cofilin and its NO-dependent effects in vitro in primary neuronal cultures as well as in vivo in the zymosan-induced paw inflammation model in rats. In primary neurons from rats treatment with the PKG-I activator 8-Br-cGMP induced a time-dependent phosphorylation of cofilin and significantly increased neurite outgrowth. Further functional analysis revealed that the underlying signal transduction pathways involve activation of the Rho-GTPases RhoA, Rac1 and Cdc42 and their corresponding downstream targets Rho-kinase (ROCK) and p21-activated kinase (PAK). In vivo, treatment of rats with the NO-synthase inhibitor l-NAME and the ROCK-inhibitor Y-27632, respectively, led to a significant decrease of cofilin phosphorylation in the spinal cord and resulted in antinociceptive effects in a model of inflammatory hyperalgesia. Our results suggest that cofilin represents a downstream target of NO/cGMP/PKG signal transduction in neurons thus indicating that it is involved in NO-mediated nociception.

Signal Regulatory Protein-{beta}1: A Microglial Modulator of Phagocytosis in Alzheimer's Disease.

Am J Pathol. 2009 Nov 5;
Gaikwad S, Larionov S, Wang Y, Dannenberg H, Matozaki T, Monsonego A, Thal DR, Neumann H

The signal regulatory protein-beta1 (SIRPbeta1) is a DAP12-associated transmembrane receptor expressed in a subset of hematopoietic cells. Recently, it was shown that peritoneal macrophages express SIRPbeta1, which positively regulated phagocytosis. Here, we found that SIRPbeta1 was up-regulated and acted as a phagocytic receptor on microglia in amyloid precursor protein J20 (APP/J20) transgenic mice and in Alzheimer's disease (AD) patients. Interferon (IFN)-gamma and IFN-beta stimulated gene transcription of SIRPbeta1 in cultured microglia. Activation of SIRPbeta1 on cultured microglia by cross-linking antibodies induced reorganization of the cytoskeleton protein beta-actin and suppressed lipopolysaccharide-induced gene transcription of tumor necrosis factor-alpha and nitric oxide synthase-2. Furthermore, activation of SIRPbeta1 increased phagocytosis of microsphere beads, neural debris, and fibrillary amyloid-beta (Abeta). Phagocytosis of neural cell debris and Abeta was impaired after lentiviral knockdown of SIRPbeta1 in primary microglial cells. Thus, SIRPbeta1 is a novel IFN-induced microglial receptor that supports clearance of neural debris and Abeta aggregates by stimulating phagocytosis.

Glycogen synthase kinase 3 in the world of cell migration.

Dev Growth Differ. 2009 Nov 5;
Sun T, Rodriguez M, Kim L

Glycogen synthase kinase 3 (GSK3) is one of the few master switch kinases that regulate many aspects of cell functions. Recent studies on cell polarization and migration have shown that GSK3 is also essential for proper Regulation of these processes. GSK3 influences cell migration as one of the regulators of the spatiotemporally controlled dynamics of the actin cytoskeleton, microtubules, and cell-to-matrix adhesions. In this mini-review, the effects of GSK3 on these three aspects of cell migration will be discussed.

Conditional Tek promoter-driven deletion of arginyltransferase in the germ line causes defects in gametogenesis and early embryonic lethality in mice.

PLoS One. 2009; 4(11): e7734
Leu NA, Kurosaka S, Kashina A

Posttranslational protein arginylation mediated by Ate1 is essential for cardiovascular development, actin cytoskeleton functioning, and cell migration. Ate1 plays a role in the Regulation of cytoskeleton and is essential for cardiovascular development and angiogenesis--capillary remodeling driven by in-tissue migration of endothelial cells. To address the role of Ate1 in cytoskeleton-dependent processes and endothelial cell function during development, we produced a conditional mouse knockout with Ate1 deletion driven by Tek endothelial receptor tyrosine kinase promoter expressed in the endothelium and in the germ line. Contrary to expectations, Tek-Ate1 mice were viable and had no visible angiogenesis-related phenotypes; however, these mice showed reproductive defects, with high rates of embryonic lethality in the second generation, at stages much earlier than the complete Ate1 knockout strain. While some of the early lethality originated from the subpopulation of embryos with homozygous Tek-Cre transgene--a problem that has not previously been reported for this commercial mouse strain--a distinct subpopulation of embryos had lethality at early post-implantation stages that could be explained only by a previously unknown defect in gametogenesis originating from Tek-driven Ate1 deletion in premeiotic germs cells. These results demonstrate a novel role of Ate1 in germ cell development.

Inositol 1,4,5-trisphosphate 3-kinase a functions as a scaffold for synaptic Rac signaling.

J Neurosci. 2009 Nov 4; 29(44): 14039-49
Kim IH, Park SK, Hong ST, Jo YS, Kim EJ, Park EH, Han SB, Shin HS, Sun W, Kim HT, Soderling SH, Kim H

Activity-dependent alterations of synaptic contacts are crucial for synaptic plasticity. The formation of new dendritic spines and synapses is known to require actin cytoskeletal reorganization specifically during neural activation phases. Yet the site-specific and time-dependent mechanisms modulating actin dynamics in mature neurons are not well understood. In this study, we show that actin dynamics in spines is regulated by a Rac anchoring and targeting function of inositol 1,4,5-trisphosphate 3-kinase A (IP(3)K-A), independent of its kinase activity. On neural activation, IP(3)K-A bound directly to activated Rac1 and recruited it to the actin cytoskeleton in the postsynaptic area. This focal targeting of activated Rac1 induced spine formation through actin dynamics downstream of Rac signaling. Consistent with the scaffolding role of IP(3)K-A, IP(3)K-A knock-out mice exhibited defects in accumulation of PAK1 by long-term potentiation-inducing stimulation. This deficiency resulted in a reduction in the reorganization of actin cytoskeletal structures in the synaptic area of dentate gyrus. Moreover, IP(3)K-A knock-out mice showed deficits of synaptic plasticity in perforant path and in hippocampal-dependent memory performances. These data support a novel model in which IP(3)K-A is critical for the spatial and temporal Regulation of spine actin remodeling, synaptic plasticity, and learning and memory via an activity-dependent Rac scaffolding mechanism.

Profiling of molecular pathways regulated by microRNA 601.

Comput Biol Chem. 2009 Oct 2;
Ohdaira H, Nakagawa H, Yoshida K

MicroRNAs (miRNAs) have been implicated in complex vertebrate developmental and pathological systems as a versatile class of molecules involved in the Regulation of various biological processes and molecular pathways. To elucidate the role of miRNAs in human somatic cells, an understanding of the molecular framework regulated by individual miRNA is essential. In this study, we examined the effect of hsa-miR-601 on gene expression changes in human lung cancer cells A549. To achieve this, DNA microarray and global pathway analyses were performed on hsa-miR-601 introduced cells for two successive days. Gene ontology analysis revealed that the effect of hsa-miR-601 over-represented the negative Regulation of translation/translational initiation, whereas GenMAPP analysis revealed that several characteristic pathways were changed in hsa-miR-601 introduced A549 cells compared to control short RNA introduced cells. Among them, up-Regulation of actin cytoskeleton and down-Regulation of Fas-induced apoptosis pathway occurred on two successive days after hsa-miR-601 introduction. Using a luciferase reporter assay, we also showed that hsa-miR-601 specifically repressed nuclear factor-kappaB (NF-kappaB) transcription factor-dependent reporter expression, a key component of the immune-oncogenesis pathway. These findings suggest that hsa-miR-601 could affect a variety of signaling pathways accompanying orchestrated gene expression changes. Our results argue that individual miRNAs affect complex Regulation of cellular signaling pathways.

Cellular prion protein in blood platelets associates with both lipid rafts and the cytoskeleton.

Thromb Haemost. 2009 Nov; 102(5): 966-74
Brouckova A, Holada K

The recently shown transmissibility of variant Creutzfeldt-Jakob disease (vCJD) by blood transfusion emphasises the need for better understanding of the cellular prion protein (PrPc) in blood. A substantial amount of cell-associated PrPc in blood resides in platelets. Platelet activation leads to up-Regulation of PrPc on the platelet surface and its release on exosomes and microparticles. The sub-cellular localisation and function of platelet PrPc, however, is poorly understood. In the present study, we investigated the association of PrPc with platelet lipid rafts and the platelet cytoskeleton. Immuno-fluorescence microscopy showed that the signals of PrPc and P-selectin, both of which occupy intracellular alpha granules, were separated on the membrane, suggesting organisation in different membrane domains. A flotation assay of platelet lysates demonstrated that a relatively small portion of platelet PrPc floats with lipid rafts, regardless of platelet activation status. This was reversed by depolymerisation of the platelet cytoskeleton, which led to flotation of most platelet PrPc, suggesting that interactions with the cytoskeleton prevent flotation of PrPc rafts. This association of PrPc with the platelet cytoskeleton was confirmed by its presence in both the isolated membrane skeleton and actin cytoskeleton. Platelet activation significantly increased the amount of PrPc associated with the cytoskeleton. Our results indicate that the localisation of PrPc in platelets is complex, with the majority of PrPc present within platelet lipid rafts linked to the platelet cytoskeleton. This localisation places PrPc in a position where it can interact with proteins involved in platelet signalling and eventually with vCJD prions.

Focal adhesion kinase-dependent Regulation of adhesive force involves vinculin recruitment to focal adhesions.

Biol Cell. 2009 Nov 2;
Dumbauld DW, Michael KE, Hanks SK, Garcia AJ

Background information. Focal adhesion kinase (FAK), an essential non-receptor tyrosine kinase, plays pivotal roles in migratory responses, adhesive signaling, and mechanotransduction. FAK-dependent Regulation of cell migration involves focal adhesion turnover dynamics as well as actin cytoskeleton polymerization and lamellipodia protrusion. Whereas roles for FAK in migratory and mechanosensing responses have been established, the contributions of FAK to the generation of adhesive forces are not well understood. Results. Using FAK-null cells expressing wild-type and mutant FAK under an inducible tetracycline promoter, we analyzed the role of FAK in the generation of steady-state adhesive forces using micropatterned substrates and a hydrodynamic adhesion assay. FAK expression reduced steady-state strength by 30% compared to FAK-null cells. FAK expression reduced vinculin localization to focal adhesions by 35% independently from changes in integrin binding and localization of talin and paxillin. RNAi knockdown of vinculin abrogated the FAK-dependent differences in adhesive force. FAK-dependent changes in vinculin localization and adhesive force were confirmed in human primary fibroblasts with FAK knocked down by RNAi. The autophosphorylation Y397 and kinase domain Y576/Y577 sites were differentially required for FAK-mediated adhesive responses. Conclusions. We demonstrate that FAK reduces steady-state adhesion strength by modulating vinculin recruitment to focal adhesions. These findings provide insights into the role of FAK in mechanical interactions between a cell and the extracellular matrix.

STRUCTURE AND FUNCTION OF HETEROTRIMERIC G PROTEIN-REGULATED RHO GUANINE NUCLEOTIDE EXCHANGE FACTORS.

Mol Pharmacol. 2009 Oct 30;
Aittaleb M, Boguth CA, Tesmer JJ

Activation of certain classes of G protein-coupled receptors (GPCRs) can lead to alterations in the actin cytoskeleton, gene transcription, cell transformation, and other processes that are known to be regulated by Rho family small molecular weight GTPases. Although these responses can occur indirectly via cross-talk from canonical heterotrimeric G protein cascades, it has recently been demonstrated that Dbl family Rho guanine nucleotide exchange factors (RhoGEFs) can serve as the direct downstream effectors of heterotrimeric G proteins. Heterotrimeric Galpha(12/13), Galpha(q), and Gbetagamma subunits are each now known to directly bind and regulate RhoGEFs. Atomic structures have recently been determined for several of these RhoGEFs and their G protein complexes, providing fresh insight into the molecular mechanisms of signal transduction between GPCRs and small molecular weight G proteins. This review covers what is currently known about the structure, function, and Regulation of these recently recognized effectors of heterotrimeric G proteins.

The molecular underpinning of lobular histological growth pattern: a genome-wide transcriptomic analysis of invasive lobular carcinomas and grade- and molecular subtype-matched invasive ductal carcinomas of no special type.

J Pathol. 2009 Sep 25;
Weigelt B, Geyer FC, Natrajan R, Lopez-Garcia MA, Ahmad AS, Savage K, Kreike B, Reis-Filho JS

Invasive lobular carcinoma (ILC) is the most frequent special type of breast cancer. The majority of these tumours are of low histological grade, express hormone receptors, and lack HER2 expression. The pleomorphic variant of ILCs (PLCs) is characterized by atypical cells with pleomorphic nuclei and is reported to have an aggressive clinical behaviour. Expression profiling studies have demonstrated that classic ILCs preferentially display a luminal phenotype, whereas PLCs may be of luminal, HER2 or molecular apocrine subtypes. The aims of this study were two-fold: to determine the transcriptomic characteristics of lobular carcinomas and to define the genome-wide transcriptomic differences between classic ILCs and PLCs. To define the transcriptomic characteristics of ILCs, minimizing the impact of histological grade and molecular subtype on the analysis, we subjected a series of grade- and molecular subtype-matched ILCs and invasive ductal carcinomas (IDCs) to genome-wide gene expression profiling using oligonucleotide microarrays. Hierarchical clustering analysis demonstrated that ILCs formed a separate cluster and a supervised analysis revealed that 5.8% of the transcriptionally regulated genes were significantly differentially expressed in ILCs compared to grade- and molecular subtype-matched IDCs. ILCs displayed down-Regulation of E-cadherin and of genes related to actin cytoskeleton remodelling, protein ubiquitin, DNA repair, cell adhesion, TGF-beta signalling; and up-Regulation of transcription factors/immediate early genes, lipid/prostaglandin biosynthesis genes, and cell migration-associated genes. Supervised analysis of classic ILCs and PLCs demonstrated that less than 0.1% of genes were significantly differentially expressed between these tumour subtypes. Our results demonstrate that ILCs differ from grade- and molecular subtype-matched IDCs in the expression of genes related to cell adhesion, cell-to-cell signalling, and actin cytoskeleton signalling. However, classic ILCs and PLCs are remarkably similar at the molecular level and should be considered as part of a spectrum of lesions. Copyright (c) 2009 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

Prognostic significance of immunohistochemical Rac1 expression in survival in early operable non-small cell lung cancer.

Med Sci Monit. 2009 Nov; 15(11): BR313-9
Yuan K, Qian C, Zheng R

BACKGROUND: The small GTPases are involved in the Regulation of critical cellular functions, such as transcription control, cell cycle, and organization of actin cytoskeleton. Although a number of investigations have established the significance of Rho-family GTPases in several human tumors, there is still little information available on the clinical significance of Rac1 expression in non-small cell lung cancer (NSCLC). Therefore, immunohistologic expression of Rac1 was studied in a tissue microarray of 111 Stage I-II NSCLCs and correlated with clinicopathologic parameters and clinical outcome. MATERIAL/METHODS: For this retrospective study 111 tissue samples, obtained from anonymized patients with early operable NSCLC (stage I-II), were used to construct a tissue microarray for immunohistochemical study. RESULTS: Rac1 showed a cytoplasmic pattern of expression in tumor cells, while normal lung components showed negative or weak cytoplasmic staining. Rac1 expression increased significantly with the advancement of the T stage (P<0.01) and the TNM stage (P<0.05). Analysis of overall survival showed that Rac1 expression was related to poor outcome (P=0.012), even in the group of stage I patients (P=0.023). Multivariate analysis showed that Rac1 overexpression was an independent marker for overall survival after adjusting for other prognostic factors (P=0.023). CONCLUSIONS: We found a positive prognostic value of immunohistologically determined Rac1 protein expression and presents Rac1 as a potential unfavorable prognosis biomarker in patients with early operable NSCLC.

Emerging evidence of a link between the polycystins and the mTOR pathways.

Pathogenetics. 2009 Oct 28; 2(1): 6
Boletta A

ABSTRACT: Autosomal dominant polycystic kidney disease (ADPKD) is a genetic disease characterized by the formation of renal cysts. This disease can be caused by mutations in two genes, PKD1 and PKD2, which encode polycystin-1 (PC-1) and -2 (PC-2), respectively. PC-1 is a large plasma membrane receptor involved in the Regulation of several biological functions and signaling pathways, and PC-2 is a calcium channel of the TRP family. The two proteins associate in a complex to prevent cyst formation, but the precise mechanism(s) involved remain largely unknown. This review will focus on recent advances in our understanding of the functions of polycystins and their role in signal transduction. Increased activity of the mammalian target of rapamycin (mTOR) kinase has been observed in cysts found in ADPKD tissues. Rapamycin has been shown to have beneficial effects in rodent models of polycystic kidney disease, prompting the initiation of pilot clinical trials with human patients. Furthermore, a direct role for PC-1 in the Regulation of cell growth (size) via mTOR has recently been demonstrated. Major advancements in the study of mTOR biology have highlighted that this kinase exists in association with two different complexes, mTOR complex 1 (mTORC1) and mTOR complex 2 (mTORC2). The mTORC1 complex regulates cell growth (size), proliferation, translation and autophagy, and mTORC2 regulates the actin cytoskeleton and apoptosis. Interestingly, mTORC2 has been shown to contain the kinase responsible for the phosphorylation of Akt at Serine 473. Previous studies have shown that PC-1 controls the PI 3-kinase/Akt cascade to regulate apoptosis and the actin cytoskeleton, suggesting that this receptor might regulate mTOR at several levels. This review aims to discuss three different, inter-related themes emerging from the literature: (i) studies performed in our and other laboratories collectively suggest that PC-1 might be able to differentially regulate the two mTOR complexes; (ii) several studies point to genetic and functional cross-talk between the PKD and TSC genes, although the molecular details remain obscure; and (iii) studies performed in mammals and in the unicellular algae Chlamidomonas Reinhardtii might highlight a link between cilia, Regulation of cell size and Regulation of the cell cycle.

Correlating cell architecture with osteogenesis: first steps towards live single cell monitoring.

Eur Cell Mater. 2009; 18: 49-60, 61-2; discussion 60
Born AK, Rottmar M, Lischer S, Pleskova M, Bruinink A, Maniura-Weber K

Cell shape and Regulation of biological processes such as proliferation and differentiation are to a large degree connected. Investigation of the possible relationship between cell shape and function is therefore important for developing new material concepts for medical applications as well as developing novel cell based sensors. Cell spreading requires a firm contact with the underlying substrate, with focal contacts (FC) being the primary sites of adhesion. They consist of a large number of clustered transmembrane proteins (integrins). FC integrins connect the cell cytoskeleton with the cell substratum. It has been demonstrated that cell spreading increases osteoblast differentiation in pre-osteoblastic progenitors. The gradual process of osteogenesis can be followed by different proteins being expressed at various time points, comprising early (e.g., bone-specific alkaline phosphatase (bALP)) and late genes (e.g., osteocalcin (OC)). In the present study we have used immunohistochemistry and RT-PCR to determine osteogenic differentiation of human bone cells (HBC). For online monitoring, fluorescently-tagged actin and vinculin were used for transfection of HBCs. Transfection of HBCs with an OC promoter gene construct allowed us to online monitor the gradual process of osteogenesis. We found distinct changes in cell architecture upon osteogenic differentiation thus providing evidence for the connection between cell shape and functional state.

Novel association of APC with intermediate filaments identified using a new versatile APC antibody.

BMC Cell Biol. 2009; 10: 75
Wang Y, Azuma Y, Friedman DB, Coffey RJ, Neufeld KL

BACKGROUND: As a key player in suppression of colon tumorigenesis, Adenomatous Polyposis Coli (APC) has been widely studied to determine its cellular functions. However, inconsistencies of commercially available APC antibodies have limited the exploration of APC function. APC is implicated in spindle formation by direct interactions with tubulin and microtubule-binding protein EB1. APC also interacts with the actin cytoskeleton to regulate cell polarity. Until now, interaction of APC with the third cytoskeletal element, intermediate filaments, has remained unexamined. RESULTS: We generated an APC antibody (APC-M2 pAb) raised against the 15 amino acid repeat region, and verified its reliability in applications including immunoprecipitation, immunoblotting, and immunofluorescence in cultured cells and tissue. Utilizing this APC-M2 pAb, we immunoprecipitated endogenous APC and its binding proteins from colon epithelial cells expressing wild-type APC. Using Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS), we identified 42 proteins in complex with APC, including beta-catenin and intermediate filament (IF) proteins lamin B1 and keratin 81. Association of lamin B1 with APC in cultured cells and human colonic tissue was verified by co-immunoprecipitation and colocalization. APC also colocalized with keratins and remained associated with IF proteins throughout a sequential extraction procedure. CONCLUSION: We introduce a versatile APC antibody that is useful for cell/tissue immunostaining, immunoblotting and immunoprecipitation. We also present evidence for interactions between APC and IFs, independent of actin filaments and microtubules. Our results suggest that APC associates with all three major components of the cytoskeleton, thus expanding potential roles for APC in the Regulation of cytoskeletal integrity.

Regulation of Insulin Secretion by Phosphatidylinositol-4,5-Bisphosphate.

Traffic. 2009 Sep 28;
Tomas A, Yermen B, Regazzi R, Pessin JE, Halban PA

Abstract The role of PIP(2) in pancreatic beta cell function was examined here using the beta cell line MIN6B1. Blocking PIP(2) with PH-PLC-GFP or PIP5KIgamma RNAi did not impact on glucose-stimulated secretion although susceptibility to apoptosis was increased. Over-expression of PIP5KIgamma improved cell survival and inhibited secretion with accumulation of endocytic vacuoles containing F-actin, PIP(2), transferrin receptor, caveolin 1, Arf6 and the insulin granule membrane protein phogrin but not insulin. Expression of constitutively active Arf6 Q67L also resulted in vacuole formation and inhibition of secretion, which was reversed by PH-PLC-GFP co-expression. PIP(2) co-localized with gelsolin and F-actin, and gelsolin co-expression partially reversed the secretory defect of PIP5KIgamma-over-expressing cells. RhoA/ROCK inhibition increased actin depolymerization and secretion, which was prevented by over-expressing PIP5KIgamma, while blocking PIP(2) reduced constitutively active RhoA V14-induced F-actin polymerization. In conclusion, although PIP(2) plays a pro-survival role in MIN6B1 cells, excessive PIP(2) production because of PIP5KIgamma over-expression inhibits secretion because of both a defective Arf6/PIP5KIgamma-dependent endocytic recycling of secretory membrane and secretory membrane components such as phogrin and the RhoA/ROCK/PIP5KIgamma-dependent perturbation of F-actin cytoskeleton remodelling.

Nemo-like kinase is involved in NGF-induced neurite outgrowth via phosphorylating MAP1B and paxillin.

J Neurochem. 2009 Oct 16;
Ishitani T, Ishitani S, Matsumoto K, Itoh M

Abstract Nerve growth factor (NGF) promotes neurite outgrowth through regulating cytoskeletal organization and cell adhesion. These activities are modulated by protein phosphorylation. Nemo-like kinase (NLK) is an evolutionarily conserved MAP kinase-like kinase that phosphorylates several transcription factors. Although NLK is known to be expressed at relatively high levels in the nervous system, its function is not well understood. We found that NGF promotes the translocation of NLK to PC12 cells' leading edges, and triggers NLK kinase activity in them. Activated NLK directly phosphorylates microtubule-associated protein-1B (MAP1B) and the focal adhesion adaptor protein, paxillin. Knockdown of NLK attenuates the phosphorylation of both paxillin and MAP1B and inhibits both the NGF-induced re-distribution of F-actin and neurite outgrowth. We also discovered that NLK is a LiCl-sensitive kinase. LiCl is known to block NGF-induced neurite outgrowth and the phosphorylation of MAP1B and paxillin in PC12 cells. Therefore, the effects of LiCl are mediated in part by blocking NLK activity. These results suggest that NLK controls the dynamics of the cytoskeleton downstream of NGF signaling.

The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events.

RNA Biol. 2009 Nov 22; 6(5):
Warzecha CC, Shen S, Xing Y, Carstens RP

Cell-type and tissue-specific alternative splicing events are regulated by combinatorial control involving both abundant RNA binding proteins as well as those with more discrete expression and specialized functions. Epithelial Splicing Regulatory Proteins 1 and 2 (ESRP1 and ESRP2) are recently discovered epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the FGFR2, ENAH, CD44 and CTNND1 transcripts. To catalogue a larger set of splicing events under the Regulation of the ESRPs we profiled splicing changes induced by RNA interference-mediated knockdown of ES RP1 and ES RP2 expression in a human epithelial cell line using the splicing sensitive Affymetrix Exon ST1.0 Arrays. Analysis of the microarray data resulted in the identification of over a hundred candidate ESRP regulated splicing events. We were able to independently validate 38 of these targets by RT-PCR. The ESRP regulated events encompass all known types of alternative splicing events, most prominent being alternative cassette exons and splicing events leading to alternative 3' terminal exons. Importantly, a number of these regulated splicing events occur in gene transcripts that encode proteins with well-described roles in the Regulation of actin cytoskeleton organization, cell-cell adhesion, cell polarity and cell migration. In sum, this work reveals a novel list of transcripts differentially spliced in epithelial and mesenchymal cells, implying that coordinated alternative splicing plays a critical role in determination of cell type identity. These results further establish ESRP1 and ESRP2 as global regulators of an epithelial splicing regulatory network.