KEGG ID: 04810
KEGG Diagram for Regulation of actin cytoskeleton
There are 191 IPI Records from this pathway found in Rattus norvegicus.
Location of Regulation of actin cytoskeleton proteins on Rat Genome
| IPI Record | Position |
|---|---|
| 1: Abi2 | :- |
| 2: Actb | 12:12047070-12050051 |
| 3: Actg1 | 10:109773489-109777655 |
| 4: Actn1 | 6:103110009-103282917 |
| 5: Actn2_predicted | 17:68670924-68773261 |
| 6: Actn3 | 1:207475569-207492267 |
| 7: Actn4 | 1:84000723-84073767 |
| 8: Apc | 18:26732147-26790383 |
| 9: Apc2_predicted | 7:10906423-10920010 |
| 10: Arhgef1 | 1:80209480-80226243 |
| 11: Arhgef12 | 8:45832789-46106412 |
| 12: arhgef6 | X:141946362-142068557 |
| 13: Arhgef7 | 16:82523280-82635476 |
| 14: Arpc1a | 12:9828469-9833876 |
| 15: Arpc1b | 12:9796269-9803645 |
| 16: Arpc2_predicted | 9:73563489-73599262 |
| 17: Arpc3_predicted | 12:35366969-35377275 |
| 18: Arpc4_predicted | 4:149262401-149267321 |
| 19: Arpc5 | 13:67755414-67764256 |
| 20: Arpc5l | 3:18798930-18801987 |
| 21: Baiap2 | 10:109351262-109418859 |
| 22: Bcar1 | 19:41646190-41669265 |
| 23: Bdkrb1 | 6:129760129-129762545 |
| 24: Bdkrb2 | :- |
| 25: Braf | 4:67121585-67243058 |
| 26: Cd14 | 18:29374597-29376328 |
| 27: Cdc42 | 5:156106131-156143040 |
| 28: Cfl1 | 1:208135825-208137410 |
| 29: Cfl2_predicted | 6:75205669-75206366 |
| 30: Chrm1 | 1:211351738-211353120 |
| 31: Chrm2 | 4:63911336-63912736 |
| 32: Chrm3 | 17:71214893-71218463 |
| 33: Chrm4 | 3:76306953-76309729 |
| 34: Chrm5 | 3:98326973-98328568 |
| 35: Coro1c_predicted | 12:43647356-43712044 |
| 36: Crk | 10:63017662-63040420 |
| 37: Crkl | 11:85520244-85554667 |
| 38: Csk | 8:61381337-61399140 |
| 39: Cyfip1_predicted | 1:107245982-107334336 |
| 40: Cyfip2_predicted | 10:31323262-31443532 |
| 41: Diap1_predicted | 18:30757721-30855455 |
| 42: Egf | 2:227107576-227194674 |
| 43: Egfr | 14:97617358-97788213 |
| 44: F2 | 3:76005323-76018612 |
| 45: F2r | 2:25987859-25989070 |
| 46: Fgd3_predicted | 17:21306220-21342775 |
| 47: Fgf1 | 18:31785480-31806452 |
| 48: Fgf10 | 2:50866799-50940319 |
| 49: Fgf11 | 10:56619650-56622972 |
| 50: Fgf12 | 11:74208696-74481037 |
| 51: Fgf13 | X:144200839-144499731 |
| 52: Fgf14 | 15:109054330-109714364 |
| 53: Fgf15 | 1:205324890-205328178 |
| 54: Fgf16 | X:93870222-93880825 |
| 55: Fgf17 | 15:51038529-51044118 |
| 56: Fgf18 | :- |
| 57: Fgf2 | 2:123893314-123947684 |
| 58: Fgf20 | 16:55386987-55393744 |
| 59: Fgf21 | 1:96082475-96083718 |
| 60: Fgf22 | 7:11463299-11465189 |
| 61: Fgf23 | 4:163468604-163476325 |
| 62: Fgf3 | 1:205269393-205273404 |
| 63: Fgf4 | 1:205292272-205293705 |
| 64: Fgf5 | 14:12713971-12734634 |
| 65: Fgf6 | 4:163403896-163412431 |
| 66: Fgf7 | 3:113468427-113517538 |
| 67: Fgf8 | 1:250951023-250956730 |
| 68: Fgf9 | 15:37114459-37155913 |
| 69: Fgfr1 | 16:70869944-70924029 |
| 70: Fgfr2 | 1:189484251-189589294 |
| 71: Fgfr3 | 14:82683191-82697229 |
| 72: Fgfr4 | 17:15512144-15527328 |
| 73: Fn1 | 9:70702181-70771155 |
| 74: Git1 | 10:66611153-66618922 |
| 75: Gna12 | 12:14275676-14354843 |
| 76: Gna13 | 10:98933230-98965795 |
| 77: Gng12 | 4:96622363-96624127 |
| 78: Gsn | 3:14360255-14386084 |
| 79: Hras | 1:201385708-201388983 |
| 80: Ins1 | 1:258001134-258001688 |
| 81: Ins2 | 1:202935548-202936379 |
| 82: IPI00204540 | 17:15261698-15262111 |
| 83: IPI00362670 | 9:63798695-63865608 |
| 84: IPI00362823 | 3:61919851-62097221 |
| 85: IPI00367137 | X:83168263-83168670 |
| 86: IPI00371093 | 10:91557256-91574194 |
| 87: IPI00763463 | :- |
| 88: IPI00765011 | :- |
| 89: Iqgap1_predicted | 1:136553443-136644285 |
| 90: Iqgap3_predicted | 2:180156261-180198814 |
| 91: Itga1 | 2:47107864-47206261 |
| 92: Itga10_predicted | 2:191448640-191466650 |
| 93: Itga11_predicted | 8:66827530-66937187 |
| 94: Itga2 | 2:46967695-47040057 |
| 95: Itga3_predicted | 10:83729230-83760455 |
| 96: Itga5 | 7:142254253-142277433 |
| 97: Itga6 | 3:54203293-54272888 |
| 98: Itga7 | 7:2230747-2269406 |
| 99: Itgad | 1:187436276-187464212 |
| 100: Itgae | :- |
| 101: Itgal | 1:186561872-186598114 |
| 102: Itgam | 1:187334413-187385583 |
| 103: Itgav_predicted | 3:66952418-67029317 |
| 104: Itgb1 | 19:58601188-58628500 |
| 105: Itgb2 | 20:11446531-11485009 |
| 106: Itgb3 | :- |
| 107: Itgb4 | 10:106080448-106116634 |
| 108: Itgb6 | 3:42286140-42360793 |
| 109: Itgb7 | 7:140971311-140984091 |
| 110: Kras | 4:182869242-182895106 |
| 111: Limk1 | 12:23091784-23125718 |
| 112: Limk2 | 14:83969282-84037218 |
| 113: Map2k1 | 8:68379077-68451583 |
| 114: Map2k2 | 7:10074654-10094005 |
| 115: Mapk1 | 11:85968732-86030389 |
| 116: Mapk3 | 1:185935044-185941249 |
| 117: Mk1 | 16:19286470-19286847 |
| 118: Mos | 5:17159015-17160181 |
| 119: Mras | 8:104244660-104300504 |
| 120: Msn | X:83760407-83784214 |
| 121: Myh10 | 10:55445288-55576098 |
| 122: Myh14 | 1:95081948-95146455 |
| 123: Myh9 | 7:115681444-115732774 |
| 124: Myl2 | 12:35653817-35663865 |
| 125: Myl7_predicted | 14:86568143-86570932 |
| 126: Myl9_predicted | 3:147177777-147193863 |
| 127: Mylk2 | 3:143252234-143262989 |
| 128: Mylk_predicted | 11:67604357-67782117 |
| 129: Mylpf | 1:186472955-186474466 |
| 130: Nckap1l_predicted | 7:142351992-142395781 |
| 131: Nras | 2:198292616-198302308 |
| 132: Pak1 | 1:155057622-155174714 |
| 133: Pak2 | 11:70529961-70588515 |
| 134: Pak3 | X:34734814-34842093 |
| 135: Pak4_predicted | 1:83671618-83718945 |
| 136: Pak6_predicted | 3:105184040-105192149 |
| 137: Pak7_predicted | 3:124152031-124457583 |
| 138: Pdgfa | 12:16155455-16172304 |
| 139: Pdgfb | 7:118245297-118261626 |
| 140: Pdgfra | 14:35369673-35418129 |
| 141: Pdgfrb | 18:57014475-57053583 |
| 142: Pfn1 | 10:57531658-57534366 |
| 143: Pfn2 | 2:147066813-147072519 |
| 144: Pik3ca | 2:118640277-118670170 |
| 145: Pik3cb | 8:103886682-103957112 |
| 146: Pik3cd_predicted | 5:166735338-166750186 |
| 147: Pik3cg_predicted | 6:50444793-50477111 |
| 148: Pik3r1 | 2:32602673-32675350 |
| 149: Pik3r2 | 16:19171101-19179650 |
| 150: Pik3r3 | 5:136497494-136566473 |
| 151: Pip5k1b | 1:227699696-227846963 |
| 152: Pip5k1c | 7:9884377-9909623 |
| 153: Pip5k2a | 17:92952704-92961338 |
| 154: Pip5k2b | 10:86464211-86490407 |
| 155: Pip5k2c | 7:67152061-67166564 |
| 156: Ppp1ca | 1:206774701-206778330 |
| 157: Ppp1cb | 6:24067538-24099280 |
| 158: Ppp1cc | 12:35580169-35598339 |
| 159: Ppp1r12a | 7:46876642-46985742 |
| 160: Ppp1r12b_predicted | 13:47710655-47917510 |
| 161: Ptk2 | 7:110933285-111084554 |
| 162: Pxn | 12:42323997-42333765 |
| 163: Rac1 | 12:11380314-11400531 |
| 164: Rac2 | 7:116520066-116532482 |
| 165: Raf1 | 4:151752583-151775613 |
| 166: RGD1561123_predicted | 1:187396184-187416273 |
| 167: RGD1563261_predicted | 10:55182226-55247889 |
| 168: RGD1563276_predicted | 11:68642354-68758943 |
| 169: RGD1564327_predicted | 17:86429719-86673201 |
| 170: RGD1565941_predicted | 2:204981254-205324562 |
| 171: RGD1565978_predicted | 9:110171418-110186247 |
| 172: Rhoa | :- |
| 173: Rock1 | 18:1366989-1511865 |
| 174: Rock2 | 6:40581295-40667231 |
| 175: Rras2 | 1:172026260-172097710 |
| 176: Rras_predicted | 1:95490697-95495452 |
| 177: Scin | 6:59237930-59357001 |
| 178: Slc9a1 | 5:151680694-151748460 |
| 179: Sos1 | 6:3310823-3394313 |
| 180: Sos2 | 6:91610826-91722481 |
| 181: Ssh2_predicted | 10:66661309-66725513 |
| 182: Ssh3 | 1:206848015-206856178 |
| 183: Tiam1 | 11:30128733-30252936 |
| 184: Tmsb4x | :- |
| 185: Vav1 | :- |
| 186: Vav2_predicted | 3:6155687-6347206 |
| 187: Vcl_predicted | 15:3480195-3654131 |
| 188: Vil2 | 1:41178192-41221334 |
| 189: Wasf1 | :- |
| 190: Wasf2 | 5:151930684-151948306 |
| 191: Was_predicted | X:26434165-26444819 |
There are 191 IPI Records from this pathway found in Mus musculus.
Location of Regulation of actin cytoskeleton proteins on Mouse Genome
| IPI Record | Position |
|---|---|
| 1: 6720456B07Rik | 6:113570535-113582725 |
| 2: Abi2 | 1:60354280-60425704 |
| 3: Actb | 5:143168256-143171864 |
| 4: Actg1 | 11:120161781-120164582 |
| 5: Actn1 | 12:81086385-81179156 |
| 6: Actn2 | 13:12323759-12395065 |
| 7: Actn3 | 19:4861223-4877884 |
| 8: Actn4 | 7:28602011-28671040 |
| 9: Apc | 18:34345794-34443382 |
| 10: Apc2 | 10:79704967-79719154 |
| 11: Araf | X:20005537-20017478 |
| 12: Arhgef1 | 7:24611809-24612156 |
| 13: Arhgef12 | 9:42714838-42856481 |
| 14: Arhgef6 | X:53578271-53685513 |
| 15: Arhgef7 | 8:11728141-11835191 |
| 16: Arpc1a | 5:145337396-145362288 |
| 17: Arpc1b | 5:145367783-145381585 |
| 18: Arpc2 | 1:74169784-74197664 |
| 19: Arpc3 | 5:122652495-122666796 |
| 20: Arpc5 | 1:154528943-154537796 |
| 21: Arpc5l | 2:38830205-38837885 |
| 22: Baiap2 | 11:119758853-119822869 |
| 23: Bcar1 | 8:114597147-114608054 |
| 24: Bdkrb1 | 12:106005141-106006478 |
| 25: Bdkrb2 | 12:105964222-105994121 |
| 26: Braf | 6:39543731-39654902 |
| 27: Cd14 | 18:36851038-36852628 |
| 28: Cdc42 | 4:136591778-136629755 |
| 29: Cfl1 | 19:5492497-5495201 |
| 30: Cfl2 | 12:55779260-55779968 |
| 31: Chrm1 | 19:8731396-8748612 |
| 32: Chrm2 | 6:36453362-36454762 |
| 33: Chrm3 | 13:9876475-9878244 |
| 34: Chrm4 | 2:91728088-91729527 |
| 35: Chrm5 | 2:112280010-112281608 |
| 36: Crk | 11:75495505-75522289 |
| 37: Crkl | 16:17365550-17399818 |
| 38: Csk | 9:57424784-57443375 |
| 39: Cyfip1 | 7:55710046-55798717 |
| 40: Cyfip2 | 11:46037278-46155773 |
| 41: D830007F02Rik | 8:88214406-88255279 |
| 42: Diap1 | 18:37969583-38061292 |
| 43: Diap2 | X:125096143-125807462 |
| 44: Diap3 | 14:85381007-85972925 |
| 45: Dock1 | 7:134562672-135011989 |
| 46: Egf | 3:129669600-129747338 |
| 47: Egfr | 11:16652206-16813912 |
| 48: F2 | 2:91426157-91437253 |
| 49: F2r | 13:96702488-96719173 |
| 50: Fgd1 | X:146387949-146429815 |
| 51: Fgd3 | 13:49275047-49321145 |
| 52: Fgf1 | 18:38965154-39044673 |
| 53: Fgf10 | 13:119833907-119910993 |
| 54: Fgf11 | 11:69612264-69618052 |
| 55: Fgf12 | 16:28075353-28480163 |
| 56: Fgf13 | X:55408923-55597751 |
| 57: Fgf14 | 14:123115526-123859945 |
| 58: Fgf15 | 7:144705922-144710343 |
| 59: Fgf16 | X:101967260-101976899 |
| 60: Fgf17 | 14:69371285-69377348 |
| 61: Fgf18 | 11:33017430-33047400 |
| 62: Fgf2 | 3:37540399-37596346 |
| 63: Fgf20 | 8:41777983-41785770 |
| 64: Fgf21 | 7:45481928-45483532 |
| 65: Fgf22 | 10:79158243-79161725 |
| 66: Fgf3 | 7:144648098-144652734 |
| 67: Fgf4 | 7:144670776-144674633 |
| 68: Fgf5 | 5:98494486-98517332 |
| 69: Fgf6 | 6:126981205-126990337 |
| 70: Fgf7 | 2:125726225-125781969 |
| 71: Fgf8 | 19:45790110-45796185 |
| 72: Fgf9 | 14:57027028-57066447 |
| 73: Fgfr1 | 8:26997826-27039466 |
| 74: Fgfr2 | 7:129953601-130057386 |
| 75: Fgfr3 | 5:34038581-34053924 |
| 76: Fgfr4 | 13:55162262-55178355 |
| 77: Fn1 | 1:71518731-71586380 |
| 78: Git1 | 11:77309607-77323969 |
| 79: Gna12 | 5:141012418-141082905 |
| 80: Gna13 | 11:109178921-109212576 |
| 81: Gng12 | 6:66945329-66950872 |
| 82: Gsn | 2:35104449-35129901 |
| 83: Hras1 | 7:141040427-141045314 |
| 84: Ins1 | 19:52317765-52318343 |
| 85: Ins2 | 7:142488051-142489098 |
| 86: IPI00409405 | 8:43745728-43746228 |
| 87: IPI00462975 | X:56391895-56393013 |
| 88: IPI00762073 | X:91761065-91761469 |
| 89: Iqgap1 | 7:80586294-80676807 |
| 90: Itga1 | 13:116080957-116222842 |
| 91: Itga10 | 3:96741908-96749918 |
| 92: Itga11 | 9:62475867-62581975 |
| 93: Itga2 | 13:115956703-116052930 |
| 94: Itga2b | 11:102269387-102285973 |
| 95: Itga3 | 11:94860566-94892891 |
| 96: Itga4 | 2:79056339-79133962 |
| 97: Itga5 | 15:103172320-103194797 |
| 98: Itga6 | 2:71587779-71657597 |
| 99: Itga7 | 10:128336767-128361229 |
| 100: Itga8 | 2:12024513-12219773 |
| 101: Itga9 | 9:118455407-118747637 |
| 102: Itgae | 11:72906778-72963636 |
| 103: Itgal | 7:127087558-127124876 |
| 104: Itgam | 7:127853827-127918264 |
| 105: Itgav | 2:83525354-83604646 |
| 106: Itgax | 7:127920710-127941804 |
| 107: Itgb1 | 8:131591503-131618179 |
| 108: Itgb2 | 10:76985685-77009099 |
| 109: Itgb2l | 16:96527198-96548509 |
| 110: Itgb3 | 11:104424146-104483465 |
| 111: Itgb4 | 11:115791069-115824502 |
| 112: Itgb5 | 16:33749412-33868892 |
| 113: Itgb6 | 2:60399131-60523442 |
| 114: Itgb7 | 15:102044030-102059969 |
| 115: Itgb8 | 12:119612103-119652710 |
| 116: Kras | 6:145173866-145207390 |
| 117: Limk1 | 5:134940679-134973184 |
| 118: Limk2 | 11:3243300-3309238 |
| 119: Map2k1 | 9:63983787-64051430 |
| 120: Map2k2 | 10:80509092-80527465 |
| 121: Mapk1 | 16:16896945-16961016 |
| 122: Mapk3 | 7:126550780-126556964 |
| 123: Mos | :- |
| 124: Mras | 9:99197332-99235248 |
| 125: Msn | X:92344584-92369353 |
| 126: Myh10 | 11:68508129-68632825 |
| 127: Myh14 | 7:44473872-44538885 |
| 128: Myh9 | 15:77587843-77669360 |
| 129: Myl2 | 5:122362366-122367386 |
| 130: Myl7 | 11:5796639-5798785 |
| 131: Mylc2b | 17:70878820-70895373 |
| 132: Mylc2pl | 5:136978805-136985721 |
| 133: Mylk | 16:34735182-34920279 |
| 134: Mylk2 | 2:152608869-152614502 |
| 135: Mylpf | 7:127004009-127005343 |
| 136: Nckap1 | 2:80301361-80382000 |
| 137: Nckap1l | 15:103281828-103326835 |
| 138: Nras | 3:103187290-103196967 |
| 139: Pak1 | 7:97718145-97787562 |
| 140: Pak2 | 16:31937610-31999020 |
| 141: Pak3 | X:138765079-139038221 |
| 142: Pak4 | 7:28267579-28277068 |
| 143: Pak6 | 2:118355211-118389459 |
| 144: Pak7 | 2:135773338-136079379 |
| 145: Pdgfa | 5:139229656-139248584 |
| 146: Pdgfb | 15:79823129-79842063 |
| 147: Pdgfra | 5:75434033-75479895 |
| 148: Pdgfrb | 18:61170519-61210428 |
| 149: Pfn1 | 11:70468044-70470830 |
| 150: Pfn2 | 3:57929825-57935466 |
| 151: Pfn3 | 13:55424375-55424788 |
| 152: Pfn4 | 12:4786043-4795752 |
| 153: Pik3ca | 3:32627755-32654380 |
| 154: Pik3cb | 9:98847754-98949439 |
| 155: Pik3cd | 4:148492970-148542498 |
| 156: Pik3cg | 12:32758720-32793858 |
| 157: Pik3r1 | 13:102781018-102868441 |
| 158: Pik3r2 | 8:73697168-73705691 |
| 159: Pik3r3 | 4:115719846-115800988 |
| 160: Pik3r5 | 11:68248320-68314041 |
| 161: Pip4k2a | 2:18760014-18915866 |
| 162: Pip4k2b | 11:97531247-97560794 |
| 163: Pip4k2c | 10:126600007-126614504 |
| 164: Pip5k1a | 3:95145888-95191855 |
| 165: Pip5k1b | 19:24371129-24506218 |
| 166: Pip5k1c | 10:80696188-80720532 |
| 167: Pip5k3 | 1:65120978-65208288 |
| 168: Ppp1ca | 19:4192157-4195419 |
| 169: Ppp1cb | 5:32735733-32794014 |
| 170: Ppp1cc | 7:119531075-119533375 |
| 171: Ppp1r12a | 10:107566510-107681685 |
| 172: Ppp1r12b | 1:136692379-136772339 |
| 173: Ptk2 | 15:73032589-73250447 |
| 174: Pxn | 5:115767727-115816985 |
| 175: Rac1 | 5:143761100-143783654 |
| 176: Rac2 | 15:78386424-78400038 |
| 177: Rac3 | 11:120537558-120540059 |
| 178: Raf1 | 6:115584217-115642173 |
| 179: Rdx | 9:51799393-51841094 |
| 180: Rhoa | 9:108164298-108196026 |
| 181: Rock1 | 18:10067465-10181315 |
| 182: Rock2 | 12:16920670-17003586 |
| 183: Rras | 7:44886032-44889683 |
| 184: Rras2 | 7:113837969-113908962 |
| 185: Slc9a1 | 4:132642305-132695773 |
| 186: Sos1 | 17:80306507-80388261 |
| 187: Sos2 | 12:70502371-70576665 |
| 188: Ssh1 | 5:114202650-114254758 |
| 189: Ssh2 | 11:77032620-77271743 |
| 190: Ssh3 | 19:4261668-4269172 |
| 191: Tiam1 | 16:89675970-90032628 |
| 192: Tiam2 | 17:3283055-3475456 |
| 193: Tmsb4x | X:162551199-162553323 |
| 194: Vav1 | 17:56964450-57013288 |
| 195: Vav2 | 2:27084113-27249042 |
| 196: Vav3 | 3:109468739-109813750 |
| 197: Vcl | 14:19717950-19822228 |
| 198: Vil2 | 17:6587789-6632412 |
| 199: Was | X:7238425-7247411 |
| 200: Wasf1 | 10:40571988-40626982 |
| 201: Wasf2 | 4:132402654-132471805 |
| 202: Wasl | 6:24563813-24614998 |
There are 191 IPI Records from this pathway found in Homo sapiens.
Location of Regulation of actin cytoskeleton proteins on Human Genome
| IPI Record | Position |
|---|---|
| 1: ABI2 | 2:203901401-204000576 |
| 2: ACTB | 7:5533313-5535814 |
| 3: ACTN1 | 14:68410793-68515747 |
| 4: ACTN2 | 1:234916431-234994554 |
| 5: ACTN3 | 11:66070967-66087373 |
| 6: ACTN4 | 19:43830167-43913010 |
| 7: APC | 5:112101483-112209834 |
| 8: APC2 | 19:1401148-1424243 |
| 9: ARAF | X:47305460-47316249 |
| 10: ARHGEF1 | 19:47079090-47103437 |
| 11: ARHGEF12 | 11:119713156-119865855 |
| 12: ARHGEF4 | 2:131390694-131521306 |
| 13: ARHGEF6 | X:135575372-135691913 |
| 14: ARHGEF7 | 13:110565783-110756081 |
| 15: ARPC1A | 7:98761446-98801821 |
| 16: ARPC1B | 7:98705476-98830335 |
| 17: ARPC2 | 2:218790119-218827315 |
| 18: ARPC3 | 12:109357090-109372541 |
| 19: ARPC4 | :- |
| 20: ARPC5 | 1:181859024-181871608 |
| 21: ARPC5L | 9:126664230-126679824 |
| 22: BAIAP2 | 17:76623557-76705827 |
| 23: BCAR1 | 16:73820430-73843004 |
| 24: BDKRB1 | 14:95799760-95800847 |
| 25: BDKRB2 | 14:95740950-95780536 |
| 26: BRAF | 7:140080754-140271033 |
| 27: C3orf10 | 3:10143338-10143574 |
| 28: CD14 | 5:139991522-139993157 |
| 29: CDC42 | 1:22235157-22292024 |
| 30: CFL1 | 11:65378884-65383462 |
| 31: CFL2 | 14:34249401-34253649 |
| 32: CHRM1 | 11:62432728-62445588 |
| 33: CHRM2 | 7:136203956-136355539 |
| 34: CHRM3 | 1:237859012-238145373 |
| 35: CHRM4 | :- |
| 36: CHRM5 | 15:32142129-32144579 |
| 37: CRK | 17:1270733-1306302 |
| 38: CRKL | 22:19601722-19638034 |
| 39: CSK | 15:72861489-72882524 |
| 40: CYFIP1 | 15:20444104-20555043 |
| 41: CYFIP2 | 5:156625669-156755184 |
| 42: DIAPH1 | 5:140875174-140978747 |
| 43: DIAPH2 | X:95826367-96746652 |
| 44: DIAPH3 | 13:59138719-59635901 |
| 45: DOCK1 | 10:128584013-129140764 |
| 46: EGF | 4:111053499-111152860 |
| 47: EGFR | 7:55054219-55242524 |
| 48: F2 | 11:46697331-46717631 |
| 49: F2R | 5:76047542-76067054 |
| 50: FGD1 | X:54488612-54539324 |
| 51: FGD3 | 9:94749554-94838339 |
| 52: FGF1 | 5:141951927-142046134 |
| 53: FGF10 | 5:44340854-44424541 |
| 54: FGF11 | 17:7283413-7288980 |
| 55: FGF12 | 3:193342992-193609532 |
| 56: FGF13 | X:137541401-137894912 |
| 57: FGF14 | 13:101169308-101852156 |
| 58: FGF16 | X:76596303-76598669 |
| 59: FGF17 | 8:21955883-21962266 |
| 60: FGF18 | 5:170779272-170816767 |
| 61: FGF19 | 11:69222188-69228287 |
| 62: FGF2 | 4:123967313-124038840 |
| 63: FGF20 | 8:16894049-16904061 |
| 64: FGF21 | 19:53950628-53953395 |
| 65: FGF22 | 19:590920-594605 |
| 66: FGF23 | 12:4347654-4359155 |
| 67: FGF3 | 11:69333917-69343129 |
| 68: FGF4 | 11:69296435-69296899 |
| 69: FGF5 | 4:81406766-81431194 |
| 70: FGF6 | 12:4413569-4425041 |
| 71: FGF7 | 15:47502751-47566815 |
| 72: FGF8 | 10:103519877-103525817 |
| 73: FGF9 | 13:21143170-21176637 |
| 74: FGFR1 | 8:38389406-38445296 |
| 75: FGFR2 | 10:122473377-123347962 |
| 76: FGFR3 | 4:1764832-1780396 |
| 77: FGFR4 | 5:176446493-176457726 |
| 78: FN1 | 2:215933409-216009041 |
| 79: GIT1 | 17:24924620-24940735 |
| 80: GNA12 | 7:2734271-2850485 |
| 81: GNA13 | 17:60437296-60483216 |
| 82: GNG12 | 1:67939737-68071738 |
| 83: GRLF1 | 19:52196889-52199655 |
| 84: GSN | 9:123070228-123134941 |
| 85: HRAS | 11:522243-525572 |
| 86: INS | 11:2137585-2139147 |
| 87: IQGAP1 | 15:88732477-88846479 |
| 88: IQGAP2 | 5:75734905-76039711 |
| 89: IQGAP3 | 1:154761821-154809020 |
| 90: ITGA1 | 5:52119531-52285241 |
| 91: ITGA10 | 1:144236248-144255225 |
| 92: ITGA11 | 15:66381469-66511531 |
| 93: ITGA2 | 5:52321014-52423805 |
| 94: ITGA2B | 17:39805076-39822399 |
| 95: ITGA3 | 17:45488431-45522843 |
| 96: ITGA4 | 2:182029864-182110711 |
| 97: ITGA5 | 12:53075316-53099317 |
| 98: ITGA6 | 2:173000616-173079256 |
| 99: ITGA7 | 12:54364640-54387949 |
| 100: ITGA8 | 10:15595954-15802130 |
| 101: ITGA9 | 3:37468817-37836285 |
| 102: ITGAD | 16:31312134-31345327 |
| 103: ITGAE | 17:3564672-3651293 |
| 104: ITGAL | 16:30391551-30441772 |
| 105: ITGAM | 16:31180512-31251207 |
| 106: ITGAV | 2:187163045-187253872 |
| 107: ITGAX | 16:31274010-31301819 |
| 108: ITGB1 | 10:33229326-33287204 |
| 109: ITGB2 | 21:45130334-45173181 |
| 110: ITGB3 | 17:42686207-42745076 |
| 111: ITGB4 | 17:71229111-71265493 |
| 112: ITGB5 | 3:125964488-126088842 |
| 113: ITGB6 | 2:160664438-160765009 |
| 114: ITGB7 | 12:51871375-51887267 |
| 115: ITGB8 | 7:20337271-20416944 |
| 116: KRAS | 12:25249449-25295121 |
| 117: LIMK1 | 7:73136092-73174790 |
| 118: LIMK2 | 22:29938250-30006066 |
| 119: LOC200025 | :- |
| 120: LOC645126 | :- |
| 121: LOC653888 | :- |
| 122: MAP2K1 | 15:64466674-64570935 |
| 123: MAP2K2 | 19:4041331-4075126 |
| 124: MAPK1 | 22:20446873-20551730 |
| 125: MAPK3 | 16:30032951-30042116 |
| 126: MLCK | 16:45298960-45339722 |
| 127: MOS | 8:57188055-57189095 |
| 128: MRAS | 3:139549229-139604299 |
| 129: MRCL3 | 18:3237528-3246226 |
| 130: MRLC2 | 18:3252123-3268247 |
| 131: MSN | X:64804236-64878517 |
| 132: MYH10 | 17:8318248-8474804 |
| 133: MYH14 | 19:55398697-55505610 |
| 134: MYH9 | 22:35007273-35113958 |
| 135: MYL2 | 12:109833009-109842766 |
| 136: MYL5 | 4:657369-665816 |
| 137: MYL7 | 7:44144990-44147441 |
| 138: MYL8P | :- |
| 139: MYL9 | 20:34603311-34611640 |
| 140: MYLC2PL | 7:101043475-101059118 |
| 141: MYLK | 3:124813835-125085839 |
| 142: MYLK2 | 20:29870822-29886174 |
| 143: MYLPF | 16:30293622-30296813 |
| 144: NCKAP1 | 2:183497857-183611831 |
| 145: NCKAP1L | 12:53177796-53223165 |
| 146: NRAS | 1:115048613-115102147 |
| 147: PAK1 | 11:76710709-76862581 |
| 148: PAK2 | 3:197951312-198043749 |
| 149: PAK3 | X:110226244-110350815 |
| 150: PAK4 | 19:44308260-44361886 |
| 151: PAK6 | 15:38319361-38356979 |
| 152: PAK7 | 20:9466036-9767689 |
| 153: PDGFA | 7:504489-525557 |
| 154: PDGFB | 22:37949310-37971006 |
| 155: PDGFRA | 4:54790204-54859171 |
| 156: PDGFRB | 5:149473598-149515615 |
| 157: PFN1 | 17:4789692-4793067 |
| 158: PFN2 | 3:151165384-151171586 |
| 159: PFN3 | 5:176759770-176760183 |
| 160: PFN4 | 2:24191745-24199678 |
| 161: PIK3CA | 3:180349005-180435189 |
| 162: PIK3CB | 3:139856921-139960875 |
| 163: PIK3CD | 1:9634390-9711564 |
| 164: PIK3CG | 7:106292977-106334801 |
| 165: PIK3R1 | 5:67547360-67633403 |
| 166: PIK3R2 | 19:18125016-18142343 |
| 167: PIK3R3 | 1:46278399-46371054 |
| 168: PIK3R5 | 17:8722953-8756559 |
| 169: PIP4K2A | 10:22863784-23043490 |
| 170: PIP4K2B | 17:34177324-34209684 |
| 171: PIP4K2C | 12:56271253-56283465 |
| 172: PIP5K1A | 1:149437651-149488636 |
| 173: PIP5K1B | 9:70510436-70813912 |
| 174: PIP5K1C | 19:3581182-3651445 |
| 175: PIP5K3 | 2:208839236-208931720 |
| 176: PPP1CA | 11:66922228-66925978 |
| 177: PPP1CB | 2:28828118-28926981 |
| 178: PPP1CC | 12:109642127-109665050 |
| 179: PPP1R12A | 12:78692317-78853366 |
| 180: PPP1R12B | 1:200584443-200824320 |
| 181: PTK2 | 8:141737683-142080514 |
| 182: PXN | 12:119132637-119187904 |
| 183: RAC1 | 7:6380651-6410120 |
| 184: RAC2 | 22:35951238-35970241 |
| 185: RAC3 | 17:77582821-77585366 |
| 186: RAF1 | 3:12600108-12680678 |
| 187: RDX | 11:109605378-109672647 |
| 188: RHOA | 3:49371585-49424530 |
| 189: ROCK1 | 18:16787533-16944869 |
| 190: ROCK2 | 2:11239229-11402162 |
| 191: RP11-145H9.1 | 6:2608871-2696153 |
| 192: RRAS | 19:54830364-54835212 |
| 193: RRAS2 | 11:14256889-14337289 |
| 194: SLC9A1 | 1:27297893-27366059 |
| 195: SOS1 | 2:39066469-39201067 |
| 196: SOS2 | 14:49654812-49767751 |
| 197: SSH1 | 12:107705100-107775480 |
| 198: SSH2 | 17:24977091-25281144 |
| 199: SSH3 | 11:66827527-66836649 |
| 200: TIAM1 | 21:31414352-31853161 |
| 201: TIAM2 | :- |
| 202: TMSB4X | X:12903148-12905267 |
| 203: TMSB4Y | Y:14324841-14327298 |
| 204: TMSL3 | 4:91979077-91979211 |
| 205: TTN | 2:179099985-179380394 |
| 206: VAV1 | 19:6723722-6808371 |
| 207: VAV2 | 9:135616837-135847547 |
| 208: VAV3 | 1:107915305-108309108 |
| 209: VCL | 10:75427878-75549924 |
| 210: VIL2 | 6:159106761-159160432 |
| 211: WAS | X:48427112-48434762 |
| 212: WASF1 | 6:110528382-110607819 |
| 213: WASF2 | 1:27603317-27689256 |
| 214: WASL | 7:123109237-123176352 |
Mechanics of the F-actin cytoskeleton.
J Biomech. 2009 Nov 12;
Stricker J, Falzone T, Gardel ML
Dynamic Regulation of the filamentous actin (F-actin) cytoskeleton is critical to numerous physical cellular processes, including cell adhesion, migration and division. Each of these processes require precise Regulation of cell shape and mechanical force generation which, to a large degree, is regulated by the dynamic mechanical behaviors of a diverse assortment of F-actin networks and bundles. In this review, we review the current understanding of the mechanics of F-actin networks and identify areas of further research needed to establish physical models. We first review our understanding of the mechanical behaviors of F-actin networks reconstituted in vitro, with a focus on the nonlinear mechanical response and behavior of "active" F-actin networks. We then explore the types of mechanical response measured of cytoskeletal F-actin networks and bundles formed in living cells and identify how these measurements correspond to those performed on reconstituted F-actin networks formed in vitro. Together, these approaches identify the challenges and opportunities in the study of living cytoskeletal matter.
J Cell Sci. 2009 Nov 15; 122(Pt 22): 4141-9
Lallemand D, Saint-Amaux AL, Giovannini M
Merlin is the product of the Nf2 tumor-suppressor gene, and inactivation of Nf2 leads to the development of neural tumors such as schwannomas and meningiomas in humans and mice. Merlin is a member of the ERM (ezrin, radixin and moesin) family of proteins that function as organizers of the actin cytoskeleton. Merlin structure is thought to be similar to that of the ERM proteins, and is held in a closed clamp conformation via intramolecular interactions of its N-terminal FERM (four-point-one, ERM) domain with an alpha-helical C-terminal domain. Like ERMs, merlin can remodel actin-rich cortical structures, yet merlin uniquely inhibits the proliferation of many different cell types. Here, we report that the F2 subdomain of the FERM domain and a domain close to the C-terminus that is defined by residues 532-579 are essential for merlin-mediated inhibition of primary Schwann cell proliferation. Furthermore, we demonstrate that the F1 subdomain of the merlin FERM domain is required for actin colocalization, proper Regulation of merlin C-terminal phosphorylation and for remodeling the cytoskeleton, yet is not required for the inhibition of Schwann cell proliferation. Thus, tumor suppression by merlin is independent of its role as an organizer of the actin cytoskeleton in Schwann cells.
Int J Cancer. 2009 Nov 11;
Villar V, Kocić J, Santibanez JF
TGF-beta1 is a potent inductor of malignance in cancer cells. TGF-beta1 stimulates the expression of extracellular matrix degrading proteases, cell migration and it is also involved in the epithelial-mesenchymal transition (EMT). In the present work, we analyzed the role of Spred2 in the urokinase-type plasminogen activator (uPA) stimulation, EMT and cell migration by TGF-beta1. We found that both the expression of mRNA and the protein level of Spred2 were lower in transformed keratinocytes PDV compared with immortalized keratinocytes MCA-3D. The transient ectopic expression of Spred2 in PDV cells inhibited the TGF-beta1-transactivated SRE-Luc reporter which is related with the ERK1,2 signal. The stable ectopic expression of Spred2 in PDV cells (SP cells) led to the loss of ERK 1,2 activation by TGF-beta1, although Smad2 activation was not affected, and the knockdown of Spred2 enhanced the activation of ERK1,2 signal by TGF-beta1. The increment of uPA expression induced by TGF-beta1 was suppressed in SP cells. In contrast, the stimulus on PAI-1 expression was not affected and comparable to parental PDV cells. SP cells under TGF-beta1 treatment were unable to display the EMT, since the overexpression of Spred2 abolished the TGF-beta1-induced disruption of the E-cadherin cell to cell interactions, reorganization of the actin cytoskeleton and up-Regulation of the mesenchymal marker vimentin. Finally, SP cells could not respond to the TGF-beta1 stimulus on cell migration. Taken together, the data in the present study suggests that Spred2 is a regulator of TGF-beta1-induced malignance in transformed keratinocytes. (c) 2009 UICC.
Cofilin phosphorylation is involved in nitric oxide/cGMP-mediated nociception.
Biochem Biophys Res Commun. 2009 Nov 5;
Zulauf L, Coste O, Marian C, Möser C, Brenneis C, Niederberger E
There is convincing evidence that nitric oxide (NO), cGMP and cGMP-dependent protein kinase I (PKG-I) are involved in the development of hyperalgesia in response to noxious stimuli. However, downstream target proteins contributing to nociception have not been completely identified so far. Several reports indicate a role of the NO/cGMP/PKG cascade in the Regulation of neurite outgrowth which is suggested to be involved in specific mechanisms of nociception. Since neurite outgrowth is strongly dependent on modulation of cytoskeleton proteins we were interested in the impact of PKG-I activation on the actin cytoskeleton and its role in inflammatory hyperalgesia. Therefore we investigated the actin-destabilising protein cofilin and its NO-dependent effects in vitro in primary neuronal cultures as well as in vivo in the zymosan-induced paw inflammation model in rats. In primary neurons from rats treatment with the PKG-I activator 8-Br-cGMP induced a time-dependent phosphorylation of cofilin and significantly increased neurite outgrowth. Further functional analysis revealed that the underlying signal transduction pathways involve activation of the Rho-GTPases RhoA, Rac1 and Cdc42 and their corresponding downstream targets Rho-kinase (ROCK) and p21-activated kinase (PAK). In vivo, treatment of rats with the NO-synthase inhibitor l-NAME and the ROCK-inhibitor Y-27632, respectively, led to a significant decrease of cofilin phosphorylation in the spinal cord and resulted in antinociceptive effects in a model of inflammatory hyperalgesia. Our results suggest that cofilin represents a downstream target of NO/cGMP/PKG signal transduction in neurons thus indicating that it is involved in NO-mediated nociception.
Signal Regulatory Protein-{beta}1: A Microglial Modulator of Phagocytosis in Alzheimer's Disease.
Am J Pathol. 2009 Nov 5;
Gaikwad S, Larionov S, Wang Y, Dannenberg H, Matozaki T, Monsonego A, Thal DR, Neumann H
The signal regulatory protein-beta1 (SIRPbeta1) is a DAP12-associated transmembrane receptor expressed in a subset of hematopoietic cells. Recently, it was shown that peritoneal macrophages express SIRPbeta1, which positively regulated phagocytosis. Here, we found that SIRPbeta1 was up-regulated and acted as a phagocytic receptor on microglia in amyloid precursor protein J20 (APP/J20) transgenic mice and in Alzheimer's disease (AD) patients. Interferon (IFN)-gamma and IFN-beta stimulated gene transcription of SIRPbeta1 in cultured microglia. Activation of SIRPbeta1 on cultured microglia by cross-linking antibodies induced reorganization of the cytoskeleton protein beta-actin and suppressed lipopolysaccharide-induced gene transcription of tumor necrosis factor-alpha and nitric oxide synthase-2. Furthermore, activation of SIRPbeta1 increased phagocytosis of microsphere beads, neural debris, and fibrillary amyloid-beta (Abeta). Phagocytosis of neural cell debris and Abeta was impaired after lentiviral knockdown of SIRPbeta1 in primary microglial cells. Thus, SIRPbeta1 is a novel IFN-induced microglial receptor that supports clearance of neural debris and Abeta aggregates by stimulating phagocytosis.
Glycogen synthase kinase 3 in the world of cell migration.
Dev Growth Differ. 2009 Nov 5;
Sun T, Rodriguez M, Kim L
Glycogen synthase kinase 3 (GSK3) is one of the few master switch kinases that regulate many aspects of cell functions. Recent studies on cell polarization and migration have shown that GSK3 is also essential for proper Regulation of these processes. GSK3 influences cell migration as one of the regulators of the spatiotemporally controlled dynamics of the actin cytoskeleton, microtubules, and cell-to-matrix adhesions. In this mini-review, the effects of GSK3 on these three aspects of cell migration will be discussed.
PLoS One. 2009; 4(11): e7734
Leu NA, Kurosaka S, Kashina A
Posttranslational protein arginylation mediated by Ate1 is essential for cardiovascular development, actin cytoskeleton functioning, and cell migration. Ate1 plays a role in the Regulation of cytoskeleton and is essential for cardiovascular development and angiogenesis--capillary remodeling driven by in-tissue migration of endothelial cells. To address the role of Ate1 in cytoskeleton-dependent processes and endothelial cell function during development, we produced a conditional mouse knockout with Ate1 deletion driven by Tek endothelial receptor tyrosine kinase promoter expressed in the endothelium and in the germ line. Contrary to expectations, Tek-Ate1 mice were viable and had no visible angiogenesis-related phenotypes; however, these mice showed reproductive defects, with high rates of embryonic lethality in the second generation, at stages much earlier than the complete Ate1 knockout strain. While some of the early lethality originated from the subpopulation of embryos with homozygous Tek-Cre transgene--a problem that has not previously been reported for this commercial mouse strain--a distinct subpopulation of embryos had lethality at early post-implantation stages that could be explained only by a previously unknown defect in gametogenesis originating from Tek-driven Ate1 deletion in premeiotic germs cells. These results demonstrate a novel role of Ate1 in germ cell development.
Inositol 1,4,5-trisphosphate 3-kinase a functions as a scaffold for synaptic Rac signaling.
J Neurosci. 2009 Nov 4; 29(44): 14039-49
Kim IH, Park SK, Hong ST, Jo YS, Kim EJ, Park EH, Han SB, Shin HS, Sun W, Kim HT, Soderling SH, Kim H
Activity-dependent alterations of synaptic contacts are crucial for synaptic plasticity. The formation of new dendritic spines and synapses is known to require actin cytoskeletal reorganization specifically during neural activation phases. Yet the site-specific and time-dependent mechanisms modulating actin dynamics in mature neurons are not well understood. In this study, we show that actin dynamics in spines is regulated by a Rac anchoring and targeting function of inositol 1,4,5-trisphosphate 3-kinase A (IP(3)K-A), independent of its kinase activity. On neural activation, IP(3)K-A bound directly to activated Rac1 and recruited it to the actin cytoskeleton in the postsynaptic area. This focal targeting of activated Rac1 induced spine formation through actin dynamics downstream of Rac signaling. Consistent with the scaffolding role of IP(3)K-A, IP(3)K-A knock-out mice exhibited defects in accumulation of PAK1 by long-term potentiation-inducing stimulation. This deficiency resulted in a reduction in the reorganization of actin cytoskeletal structures in the synaptic area of dentate gyrus. Moreover, IP(3)K-A knock-out mice showed deficits of synaptic plasticity in perforant path and in hippocampal-dependent memory performances. These data support a novel model in which IP(3)K-A is critical for the spatial and temporal Regulation of spine actin remodeling, synaptic plasticity, and learning and memory via an activity-dependent Rac scaffolding mechanism.
Profiling of molecular pathways regulated by microRNA 601.
Comput Biol Chem. 2009 Oct 2;
Ohdaira H, Nakagawa H, Yoshida K
MicroRNAs (miRNAs) have been implicated in complex vertebrate developmental and pathological systems as a versatile class of molecules involved in the Regulation of various biological processes and molecular pathways. To elucidate the role of miRNAs in human somatic cells, an understanding of the molecular framework regulated by individual miRNA is essential. In this study, we examined the effect of hsa-miR-601 on gene expression changes in human lung cancer cells A549. To achieve this, DNA microarray and global pathway analyses were performed on hsa-miR-601 introduced cells for two successive days. Gene ontology analysis revealed that the effect of hsa-miR-601 over-represented the negative Regulation of translation/translational initiation, whereas GenMAPP analysis revealed that several characteristic pathways were changed in hsa-miR-601 introduced A549 cells compared to control short RNA introduced cells. Among them, up-Regulation of actin cytoskeleton and down-Regulation of Fas-induced apoptosis pathway occurred on two successive days after hsa-miR-601 introduction. Using a luciferase reporter assay, we also showed that hsa-miR-601 specifically repressed nuclear factor-kappaB (NF-kappaB) transcription factor-dependent reporter expression, a key component of the immune-oncogenesis pathway. These findings suggest that hsa-miR-601 could affect a variety of signaling pathways accompanying orchestrated gene expression changes. Our results argue that individual miRNAs affect complex Regulation of cellular signaling pathways.
Cellular prion protein in blood platelets associates with both lipid rafts and the cytoskeleton.
Thromb Haemost. 2009 Nov; 102(5): 966-74
Brouckova A, Holada K
The recently shown transmissibility of variant Creutzfeldt-Jakob disease (vCJD) by blood transfusion emphasises the need for better understanding of the cellular prion protein (PrPc) in blood. A substantial amount of cell-associated PrPc in blood resides in platelets. Platelet activation leads to up-Regulation of PrPc on the platelet surface and its release on exosomes and microparticles. The sub-cellular localisation and function of platelet PrPc, however, is poorly understood. In the present study, we investigated the association of PrPc with platelet lipid rafts and the platelet cytoskeleton. Immuno-fluorescence microscopy showed that the signals of PrPc and P-selectin, both of which occupy intracellular alpha granules, were separated on the membrane, suggesting organisation in different membrane domains. A flotation assay of platelet lysates demonstrated that a relatively small portion of platelet PrPc floats with lipid rafts, regardless of platelet activation status. This was reversed by depolymerisation of the platelet cytoskeleton, which led to flotation of most platelet PrPc, suggesting that interactions with the cytoskeleton prevent flotation of PrPc rafts. This association of PrPc with the platelet cytoskeleton was confirmed by its presence in both the isolated membrane skeleton and actin cytoskeleton. Platelet activation significantly increased the amount of PrPc associated with the cytoskeleton. Our results indicate that the localisation of PrPc in platelets is complex, with the majority of PrPc present within platelet lipid rafts linked to the platelet cytoskeleton. This localisation places PrPc in a position where it can interact with proteins involved in platelet signalling and eventually with vCJD prions.
Biol Cell. 2009 Nov 2;
Dumbauld DW, Michael KE, Hanks SK, Garcia AJ
Background information. Focal adhesion kinase (FAK), an essential non-receptor tyrosine kinase, plays pivotal roles in migratory responses, adhesive signaling, and mechanotransduction. FAK-dependent Regulation of cell migration involves focal adhesion turnover dynamics as well as actin cytoskeleton polymerization and lamellipodia protrusion. Whereas roles for FAK in migratory and mechanosensing responses have been established, the contributions of FAK to the generation of adhesive forces are not well understood. Results. Using FAK-null cells expressing wild-type and mutant FAK under an inducible tetracycline promoter, we analyzed the role of FAK in the generation of steady-state adhesive forces using micropatterned substrates and a hydrodynamic adhesion assay. FAK expression reduced steady-state strength by 30% compared to FAK-null cells. FAK expression reduced vinculin localization to focal adhesions by 35% independently from changes in integrin binding and localization of talin and paxillin. RNAi knockdown of vinculin abrogated the FAK-dependent differences in adhesive force. FAK-dependent changes in vinculin localization and adhesive force were confirmed in human primary fibroblasts with FAK knocked down by RNAi. The autophosphorylation Y397 and kinase domain Y576/Y577 sites were differentially required for FAK-mediated adhesive responses. Conclusions. We demonstrate that FAK reduces steady-state adhesion strength by modulating vinculin recruitment to focal adhesions. These findings provide insights into the role of FAK in mechanical interactions between a cell and the extracellular matrix.
Mol Pharmacol. 2009 Oct 30;
Aittaleb M, Boguth CA, Tesmer JJ
Activation of certain classes of G protein-coupled receptors (GPCRs) can lead to alterations in the actin cytoskeleton, gene transcription, cell transformation, and other processes that are known to be regulated by Rho family small molecular weight GTPases. Although these responses can occur indirectly via cross-talk from canonical heterotrimeric G protein cascades, it has recently been demonstrated that Dbl family Rho guanine nucleotide exchange factors (RhoGEFs) can serve as the direct downstream effectors of heterotrimeric G proteins. Heterotrimeric Galpha(12/13), Galpha(q), and Gbetagamma subunits are each now known to directly bind and regulate RhoGEFs. Atomic structures have recently been determined for several of these RhoGEFs and their G protein complexes, providing fresh insight into the molecular mechanisms of signal transduction between GPCRs and small molecular weight G proteins. This review covers what is currently known about the structure, function, and Regulation of these recently recognized effectors of heterotrimeric G proteins.
J Pathol. 2009 Sep 25;
Weigelt B, Geyer FC, Natrajan R, Lopez-Garcia MA, Ahmad AS, Savage K, Kreike B, Reis-Filho JS
Invasive lobular carcinoma (ILC) is the most frequent special type of breast cancer. The majority of these tumours are of low histological grade, express hormone receptors, and lack HER2 expression. The pleomorphic variant of ILCs (PLCs) is characterized by atypical cells with pleomorphic nuclei and is reported to have an aggressive clinical behaviour. Expression profiling studies have demonstrated that classic ILCs preferentially display a luminal phenotype, whereas PLCs may be of luminal, HER2 or molecular apocrine subtypes. The aims of this study were two-fold: to determine the transcriptomic characteristics of lobular carcinomas and to define the genome-wide transcriptomic differences between classic ILCs and PLCs. To define the transcriptomic characteristics of ILCs, minimizing the impact of histological grade and molecular subtype on the analysis, we subjected a series of grade- and molecular subtype-matched ILCs and invasive ductal carcinomas (IDCs) to genome-wide gene expression profiling using oligonucleotide microarrays. Hierarchical clustering analysis demonstrated that ILCs formed a separate cluster and a supervised analysis revealed that 5.8% of the transcriptionally regulated genes were significantly differentially expressed in ILCs compared to grade- and molecular subtype-matched IDCs. ILCs displayed down-Regulation of E-cadherin and of genes related to actin cytoskeleton remodelling, protein ubiquitin, DNA repair, cell adhesion, TGF-beta signalling; and up-Regulation of transcription factors/immediate early genes, lipid/prostaglandin biosynthesis genes, and cell migration-associated genes. Supervised analysis of classic ILCs and PLCs demonstrated that less than 0.1% of genes were significantly differentially expressed between these tumour subtypes. Our results demonstrate that ILCs differ from grade- and molecular subtype-matched IDCs in the expression of genes related to cell adhesion, cell-to-cell signalling, and actin cytoskeleton signalling. However, classic ILCs and PLCs are remarkably similar at the molecular level and should be considered as part of a spectrum of lesions. Copyright (c) 2009 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.
Med Sci Monit. 2009 Nov; 15(11): BR313-9
Yuan K, Qian C, Zheng R
BACKGROUND: The small GTPases are involved in the Regulation of critical cellular functions, such as transcription control, cell cycle, and organization of actin cytoskeleton. Although a number of investigations have established the significance of Rho-family GTPases in several human tumors, there is still little information available on the clinical significance of Rac1 expression in non-small cell lung cancer (NSCLC). Therefore, immunohistologic expression of Rac1 was studied in a tissue microarray of 111 Stage I-II NSCLCs and correlated with clinicopathologic parameters and clinical outcome. MATERIAL/METHODS: For this retrospective study 111 tissue samples, obtained from anonymized patients with early operable NSCLC (stage I-II), were used to construct a tissue microarray for immunohistochemical study. RESULTS: Rac1 showed a cytoplasmic pattern of expression in tumor cells, while normal lung components showed negative or weak cytoplasmic staining. Rac1 expression increased significantly with the advancement of the T stage (P<0.01) and the TNM stage (P<0.05). Analysis of overall survival showed that Rac1 expression was related to poor outcome (P=0.012), even in the group of stage I patients (P=0.023). Multivariate analysis showed that Rac1 overexpression was an independent marker for overall survival after adjusting for other prognostic factors (P=0.023). CONCLUSIONS: We found a positive prognostic value of immunohistologically determined Rac1 protein expression and presents Rac1 as a potential unfavorable prognosis biomarker in patients with early operable NSCLC.
Emerging evidence of a link between the polycystins and the mTOR pathways.
Pathogenetics. 2009 Oct 28; 2(1): 6
Boletta A
ABSTRACT: Autosomal dominant polycystic kidney disease (ADPKD) is a genetic disease characterized by the formation of renal cysts. This disease can be caused by mutations in two genes, PKD1 and PKD2, which encode polycystin-1 (PC-1) and -2 (PC-2), respectively. PC-1 is a large plasma membrane receptor involved in the Regulation of several biological functions and signaling pathways, and PC-2 is a calcium channel of the TRP family. The two proteins associate in a complex to prevent cyst formation, but the precise mechanism(s) involved remain largely unknown. This review will focus on recent advances in our understanding of the functions of polycystins and their role in signal transduction. Increased activity of the mammalian target of rapamycin (mTOR) kinase has been observed in cysts found in ADPKD tissues. Rapamycin has been shown to have beneficial effects in rodent models of polycystic kidney disease, prompting the initiation of pilot clinical trials with human patients. Furthermore, a direct role for PC-1 in the Regulation of cell growth (size) via mTOR has recently been demonstrated. Major advancements in the study of mTOR biology have highlighted that this kinase exists in association with two different complexes, mTOR complex 1 (mTORC1) and mTOR complex 2 (mTORC2). The mTORC1 complex regulates cell growth (size), proliferation, translation and autophagy, and mTORC2 regulates the actin cytoskeleton and apoptosis. Interestingly, mTORC2 has been shown to contain the kinase responsible for the phosphorylation of Akt at Serine 473. Previous studies have shown that PC-1 controls the PI 3-kinase/Akt cascade to regulate apoptosis and the actin cytoskeleton, suggesting that this receptor might regulate mTOR at several levels. This review aims to discuss three different, inter-related themes emerging from the literature: (i) studies performed in our and other laboratories collectively suggest that PC-1 might be able to differentially regulate the two mTOR complexes; (ii) several studies point to genetic and functional cross-talk between the PKD and TSC genes, although the molecular details remain obscure; and (iii) studies performed in mammals and in the unicellular algae Chlamidomonas Reinhardtii might highlight a link between cilia, Regulation of cell size and Regulation of the cell cycle.
Correlating cell architecture with osteogenesis: first steps towards live single cell monitoring.
Eur Cell Mater. 2009; 18: 49-60, 61-2; discussion 60
Born AK, Rottmar M, Lischer S, Pleskova M, Bruinink A, Maniura-Weber K
Cell shape and Regulation of biological processes such as proliferation and differentiation are to a large degree connected. Investigation of the possible relationship between cell shape and function is therefore important for developing new material concepts for medical applications as well as developing novel cell based sensors. Cell spreading requires a firm contact with the underlying substrate, with focal contacts (FC) being the primary sites of adhesion. They consist of a large number of clustered transmembrane proteins (integrins). FC integrins connect the cell cytoskeleton with the cell substratum. It has been demonstrated that cell spreading increases osteoblast differentiation in pre-osteoblastic progenitors. The gradual process of osteogenesis can be followed by different proteins being expressed at various time points, comprising early (e.g., bone-specific alkaline phosphatase (bALP)) and late genes (e.g., osteocalcin (OC)). In the present study we have used immunohistochemistry and RT-PCR to determine osteogenic differentiation of human bone cells (HBC). For online monitoring, fluorescently-tagged actin and vinculin were used for transfection of HBCs. Transfection of HBCs with an OC promoter gene construct allowed us to online monitor the gradual process of osteogenesis. We found distinct changes in cell architecture upon osteogenic differentiation thus providing evidence for the connection between cell shape and functional state.
Novel association of APC with intermediate filaments identified using a new versatile APC antibody.
BMC Cell Biol. 2009; 10: 75
Wang Y, Azuma Y, Friedman DB, Coffey RJ, Neufeld KL
BACKGROUND: As a key player in suppression of colon tumorigenesis, Adenomatous Polyposis Coli (APC) has been widely studied to determine its cellular functions. However, inconsistencies of commercially available APC antibodies have limited the exploration of APC function. APC is implicated in spindle formation by direct interactions with tubulin and microtubule-binding protein EB1. APC also interacts with the actin cytoskeleton to regulate cell polarity. Until now, interaction of APC with the third cytoskeletal element, intermediate filaments, has remained unexamined. RESULTS: We generated an APC antibody (APC-M2 pAb) raised against the 15 amino acid repeat region, and verified its reliability in applications including immunoprecipitation, immunoblotting, and immunofluorescence in cultured cells and tissue. Utilizing this APC-M2 pAb, we immunoprecipitated endogenous APC and its binding proteins from colon epithelial cells expressing wild-type APC. Using Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS), we identified 42 proteins in complex with APC, including beta-catenin and intermediate filament (IF) proteins lamin B1 and keratin 81. Association of lamin B1 with APC in cultured cells and human colonic tissue was verified by co-immunoprecipitation and colocalization. APC also colocalized with keratins and remained associated with IF proteins throughout a sequential extraction procedure. CONCLUSION: We introduce a versatile APC antibody that is useful for cell/tissue immunostaining, immunoblotting and immunoprecipitation. We also present evidence for interactions between APC and IFs, independent of actin filaments and microtubules. Our results suggest that APC associates with all three major components of the cytoskeleton, thus expanding potential roles for APC in the Regulation of cytoskeletal integrity.
Regulation of Insulin Secretion by Phosphatidylinositol-4,5-Bisphosphate.
Traffic. 2009 Sep 28;
Tomas A, Yermen B, Regazzi R, Pessin JE, Halban PA
Abstract The role of PIP(2) in pancreatic beta cell function was examined here using the beta cell line MIN6B1. Blocking PIP(2) with PH-PLC-GFP or PIP5KIgamma RNAi did not impact on glucose-stimulated secretion although susceptibility to apoptosis was increased. Over-expression of PIP5KIgamma improved cell survival and inhibited secretion with accumulation of endocytic vacuoles containing F-actin, PIP(2), transferrin receptor, caveolin 1, Arf6 and the insulin granule membrane protein phogrin but not insulin. Expression of constitutively active Arf6 Q67L also resulted in vacuole formation and inhibition of secretion, which was reversed by PH-PLC-GFP co-expression. PIP(2) co-localized with gelsolin and F-actin, and gelsolin co-expression partially reversed the secretory defect of PIP5KIgamma-over-expressing cells. RhoA/ROCK inhibition increased actin depolymerization and secretion, which was prevented by over-expressing PIP5KIgamma, while blocking PIP(2) reduced constitutively active RhoA V14-induced F-actin polymerization. In conclusion, although PIP(2) plays a pro-survival role in MIN6B1 cells, excessive PIP(2) production because of PIP5KIgamma over-expression inhibits secretion because of both a defective Arf6/PIP5KIgamma-dependent endocytic recycling of secretory membrane and secretory membrane components such as phogrin and the RhoA/ROCK/PIP5KIgamma-dependent perturbation of F-actin cytoskeleton remodelling.
J Neurochem. 2009 Oct 16;
Ishitani T, Ishitani S, Matsumoto K, Itoh M
Abstract Nerve growth factor (NGF) promotes neurite outgrowth through regulating cytoskeletal organization and cell adhesion. These activities are modulated by protein phosphorylation. Nemo-like kinase (NLK) is an evolutionarily conserved MAP kinase-like kinase that phosphorylates several transcription factors. Although NLK is known to be expressed at relatively high levels in the nervous system, its function is not well understood. We found that NGF promotes the translocation of NLK to PC12 cells' leading edges, and triggers NLK kinase activity in them. Activated NLK directly phosphorylates microtubule-associated protein-1B (MAP1B) and the focal adhesion adaptor protein, paxillin. Knockdown of NLK attenuates the phosphorylation of both paxillin and MAP1B and inhibits both the NGF-induced re-distribution of F-actin and neurite outgrowth. We also discovered that NLK is a LiCl-sensitive kinase. LiCl is known to block NGF-induced neurite outgrowth and the phosphorylation of MAP1B and paxillin in PC12 cells. Therefore, the effects of LiCl are mediated in part by blocking NLK activity. These results suggest that NLK controls the dynamics of the cytoskeleton downstream of NGF signaling.
RNA Biol. 2009 Nov 22; 6(5):
Warzecha CC, Shen S, Xing Y, Carstens RP
Cell-type and tissue-specific alternative splicing events are regulated by combinatorial control involving both abundant RNA binding proteins as well as those with more discrete expression and specialized functions. Epithelial Splicing Regulatory Proteins 1 and 2 (ESRP1 and ESRP2) are recently discovered epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the FGFR2, ENAH, CD44 and CTNND1 transcripts. To catalogue a larger set of splicing events under the Regulation of the ESRPs we profiled splicing changes induced by RNA interference-mediated knockdown of ES RP1 and ES RP2 expression in a human epithelial cell line using the splicing sensitive Affymetrix Exon ST1.0 Arrays. Analysis of the microarray data resulted in the identification of over a hundred candidate ESRP regulated splicing events. We were able to independently validate 38 of these targets by RT-PCR. The ESRP regulated events encompass all known types of alternative splicing events, most prominent being alternative cassette exons and splicing events leading to alternative 3' terminal exons. Importantly, a number of these regulated splicing events occur in gene transcripts that encode proteins with well-described roles in the Regulation of actin cytoskeleton organization, cell-cell adhesion, cell polarity and cell migration. In sum, this work reveals a novel list of transcripts differentially spliced in epithelial and mesenchymal cells, implying that coordinated alternative splicing plays a critical role in determination of cell type identity. These results further establish ESRP1 and ESRP2 as global regulators of an epithelial splicing regulatory network.